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NTM neurotrimin [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100413951, updated on 10-Oct-2024

Summary

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Gene symbol
NTM
Gene description
neurotrimin
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Also known as
OPCML
Orthologs
human mouse all
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Genomic context

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See NTM in Genome Data Viewer
Location:
chromosome: 11
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 11 NC_071452.1 (28924823..29898438)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 11 NC_048393.1 (28887986..29862726)

Chromosome 11 - NC_071452.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 19 Neighboring gene uncharacterized LOC118145740 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene uncharacterized LOC118145589 Neighboring gene uncharacterized LOC128929101 Neighboring gene uncharacterized LOC118145591 Neighboring gene opioid binding protein/cell adhesion molecule like Neighboring gene uncharacterized LOC118145590

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neurotrimin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071452.1 Reference mCalJa1.2.pat.X

    Range
    28924823..29898438
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054241745.1 → XP_054097720.1  neurotrimin isoform X6

  2. XM_035264005.2 → XP_035119896.1  neurotrimin isoform X5

    UniProtKB/TrEMBL
    U3DJX5
    Conserved Domains (3) summary
    pfam13927
    Location:222 → 299
    Ig_3; Immunoglobulin domain
    cd00096
    Location:223 → 229
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:44 → 132
    Ig; Immunoglobulin domain

  3. XM_035264007.2 → XP_035119898.1  neurotrimin isoform X7

    UniProtKB/TrEMBL
    U3DJX5
    Conserved Domains (3) summary
    pfam13927
    Location:222 → 299
    Ig_3; Immunoglobulin domain
    cd00096
    Location:223 → 229
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:44 → 132
    Ig; Immunoglobulin domain

  4. XM_035264008.2 → XP_035119899.1  neurotrimin isoform X8

    UniProtKB/TrEMBL
    U3CKD9, U3DJX5
    Conserved Domains (3) summary
    pfam13927
    Location:222 → 299
    Ig_3; Immunoglobulin domain
    cd00096
    Location:223 → 229
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:44 → 132
    Ig; Immunoglobulin domain

  5. XM_035264010.2 → XP_035119901.1  neurotrimin isoform X9

    UniProtKB/TrEMBL
    U3DJX5, U3E1P9
    Conserved Domains (3) summary
    pfam13927
    Location:222 → 299
    Ig_3; Immunoglobulin domain
    cd00096
    Location:223 → 229
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:44 → 132
    Ig; Immunoglobulin domain

  6. XM_054241742.1 → XP_054097717.1  neurotrimin isoform X1

  7. XM_054241743.1 → XP_054097718.1  neurotrimin isoform X2

  8. XM_054241744.1 → XP_054097719.1  neurotrimin isoform X3

  9. XM_035264011.2 → XP_035119902.2  neurotrimin isoform X4

  10. XM_054241748.1 → XP_054097723.1  neurotrimin isoform X1

  11. XM_035264006.2 → XP_035119897.1  neurotrimin isoform X6

    UniProtKB/TrEMBL
    U3D2H6
    Conserved Domains (3) summary
    pfam13927
    Location:213 → 290
    Ig_3; Immunoglobulin domain
    cd00096
    Location:214 → 220
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:35 → 123
    Ig; Immunoglobulin domain

  12. XM_054241747.1 → XP_054097722.1  neurotrimin isoform X1

  13. XM_054241746.1 → XP_054097721.1  neurotrimin isoform X1

  14. XM_054241749.1 → XP_054097724.1  neurotrimin isoform X10

Nucleotide Protein
Heading Accession and Version

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