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PLS1 plastin 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100411727, updated on 6-Jun-2024

Summary

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Gene symbol
PLS1
Gene description
plastin 1
See related
Ensembl:ENSCJAG00000001762
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Also known as
plastin-1
Orthologs
human mouse all
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Genomic context

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See PLS1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 17 NC_071458.1 (34975032..35089935, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 17 NC_048399.1 (35136245..35265845, complement)

Chromosome 17 - NC_071458.1Genomic Context describing neighboring genes Neighboring gene U7 small nuclear RNA Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene transient receptor potential cation channel subfamily C member 1 Neighboring gene ATR serine/threonine kinase Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 1-like Neighboring gene U1 spliceosomal RNA Neighboring gene 5'-3' exoribonuclease 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in actin filament network formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin filament bundle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plastin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071458.1 Reference mCalJa1.2.pat.X

    Range
    34975032..35089935 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003735048.4 → XP_003735096.2  plastin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8I3W0M4, F7HFN7, U3D726
    Conserved Domains (3) summary
    COG5069
    Location:53 → 674
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd21323
    Location:153 → 297
    CH_PLS1_rpt1; first calponin homology (CH) domain found in plastin-1
    cd21329
    Location:444 → 561
    CH_PLS1_rpt3; third calponin homology (CH) domain found in plastin-1

  2. XM_054247177.1 → XP_054103152.1  plastin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8I3W0M4, A0A8J8Y023

  3. XM_035278085.2 → XP_035133976.1  plastin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8I3W0M4, A0A8J8Y023
    Conserved Domains (3) summary
    COG5069
    Location:13 → 621
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd21323
    Location:100 → 244
    CH_PLS1_rpt1; first calponin homology (CH) domain found in plastin-1
    cd21329
    Location:391 → 508
    CH_PLS1_rpt3; third calponin homology (CH) domain found in plastin-1

  4. XM_002759524.5 → XP_002759570.1  plastin-1 isoform X2

    See identical proteins and their annotated locations for XP_002759570.1

    UniProtKB/TrEMBL
    A0A8I3W0M4, A0A8J8Y023
    Related
    ENSCJAP00000003200.2
    Conserved Domains (3) summary
    COG5069
    Location:13 → 621
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd21323
    Location:100 → 244
    CH_PLS1_rpt1; first calponin homology (CH) domain found in plastin-1
    cd21329
    Location:391 → 508
    CH_PLS1_rpt3; third calponin homology (CH) domain found in plastin-1

  5. XM_017965777.3 → XP_017821266.1  plastin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8I3W0M4, A0A8J8Y023
    Conserved Domains (3) summary
    COG5069
    Location:13 → 621
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd21323
    Location:100 → 244
    CH_PLS1_rpt1; first calponin homology (CH) domain found in plastin-1
    cd21329
    Location:391 → 508
    CH_PLS1_rpt3; third calponin homology (CH) domain found in plastin-1

  6. XM_054247178.1 → XP_054103153.1  plastin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8I3W0M4, A0A8J8Y023
Nucleotide Protein
Heading Accession and Version

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