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PARS2 prolyl-tRNA synthetase 2, mitochondrial [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100408055, updated on 6-Jun-2024

Summary

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Gene symbol
PARS2
Gene description
prolyl-tRNA synthetase 2, mitochondrial
See related
Ensembl:ENSCJAG00000015633
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 7 NC_071448.1 (88931483..88996065, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 7 NC_048389.1 (90472565..90478410, complement)

Chromosome 7 - NC_071448.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA thioesterase 11 Neighboring gene 40S ribosomal protein S15a-like Neighboring gene family with sequence similarity 151 member A Neighboring gene maestro heat like repeat family member 7 Neighboring gene tetratricopeptide repeat domain 4 Neighboring gene uncharacterized LOC103794446 Neighboring gene tetratricopeptide repeat domain 22 Neighboring gene ciliary microtubule associated protein 2 Neighboring gene 24-dehydrocholesterol reductase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proline-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in prolyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable proline--tRNA ligase, mitochondrial
Names
prolyl-tRNA synthetase 2, mitochondrial (putative)
putative proline--tRNA ligase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071448.1 Reference mCalJa1.2.pat.X

    Range
    88931483..88996065 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054236287.1 → XP_054092262.1  probable proline--tRNA ligase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8I3WNZ2, A0A8I3X223

  2. XM_035251606.2 → XP_035107497.1  probable proline--tRNA ligase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8I3X223, U3ESH3
    Conserved Domains (2) summary
    cd00779
    Location:65 → 354
    ProRS_core_prok; Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of ...
    cl00266
    Location:369 → 470
    HGTP_anticodon; HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for ...

  3. XM_035251607.2 → XP_035107498.1  probable proline--tRNA ligase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8I3X223, U3ESH3
    Conserved Domains (2) summary
    cd00779
    Location:65 → 354
    ProRS_core_prok; Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of ...
    cl00266
    Location:369 → 470
    HGTP_anticodon; HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for ...
Nucleotide Protein
Heading Accession and Version

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