U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SEMA3F semaphorin 3F [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100407382, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
SEMA3F
Gene description
semaphorin 3F
See related
Ensembl:ENSCJAG00000004851
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SEMA3F in Genome Data Viewer
Location:
chromosome: 15
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 15 NC_071456.1 (26496774..26530346)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 15 NC_048397.1 (27195334..27229268)

Chromosome 15 - NC_071456.1Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase omega 1 pseudogene Neighboring gene uncharacterized LOC128929728 Neighboring gene G protein subunit alpha transducin 1 Neighboring gene solute carrier family 38 member 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
semaphorin-3F

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071456.1 Reference mCalJa1.2.pat.X

    Range
    26496774..26530346
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035275571.2 → XP_035131462.1  semaphorin-3F isoform X1

    UniProtKB/TrEMBL
    U3DHH1, U3EFR7
    Conserved Domains (3) summary
    cd11254
    Location:47 → 547
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:546 → 583
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:607 → 696
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

  2. XM_035275570.2 → XP_035131461.1  semaphorin-3F isoform X1

    UniProtKB/TrEMBL
    U3DHH1, U3EFR7
    Conserved Domains (3) summary
    cd11254
    Location:47 → 547
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:546 → 583
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:607 → 696
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

  3. XM_035275573.2 → XP_035131464.1  semaphorin-3F isoform X1

    UniProtKB/TrEMBL
    U3DHH1, U3EFR7
    Conserved Domains (3) summary
    cd11254
    Location:47 → 547
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:546 → 583
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:607 → 696
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

  4. XM_035275572.2 → XP_035131463.1  semaphorin-3F isoform X1

    UniProtKB/TrEMBL
    U3DHH1, U3EFR7
    Conserved Domains (3) summary
    cd11254
    Location:47 → 547
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:546 → 583
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:607 → 696
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

  5. XM_054245673.1 → XP_054101648.1  semaphorin-3F isoform X1

    UniProtKB/TrEMBL
    U3EFR7

  6. XM_054245675.1 → XP_054101650.1  semaphorin-3F isoform X2

    UniProtKB/TrEMBL
    F6SIM9

  7. XM_054245676.1 → XP_054101651.1  semaphorin-3F isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.