DGCR2 DiGeorge syndrome critical region gene 2 [Callithrix jacchus (white-tufted-ear marmoset)] - Gene

Summary

Gene symbol: DGCR2
Gene description: DiGeorge syndrome critical region gene 2
See related: Ensembl:ENSCJAG00000001699
Gene type: protein coding
RefSeq status: MODEL
Organism: Callithrix jacchus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2023_03	current	mCalJa1.2.pat.X (GCF_011100555.1)	1	NC_071442.1 (208113483..208186297, complement)
105	previous assembly	Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1)	1	NC_048383.1 (209011222..209083993, complement)

Chromosome 1 - NC_071442.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: integral membrane protein DGCR2/IDD

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

NC_071442.1 Reference mCalJa1.2.pat.X

Range

208113483..208186297 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_035269562.2 → XP_035125453.1 integral membrane protein DGCR2/IDD isoform X4

UniProtKB/TrEMBL

F7G6W2

Conserved Domains (2) summary

cd03599
Location:112 → 264

CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)

cd00112
Location:30 → 66

LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
XM_009006539.4 → XP_009004787.1 integral membrane protein DGCR2/IDD isoform X2

See identical proteins and their annotated locations for XP_009004787.1

UniProtKB/TrEMBL

F7G6W2, U3F7U6

Related

ENSCJAP00000045415.1

Conserved Domains (3) summary

cd03599
Location:112 → 264

CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)

smart00214
Location:268 → 326

VWC; von Willebrand factor (vWF) type C domain

cd00112
Location:30 → 66

LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
XM_054245978.1 → XP_054101953.1 integral membrane protein DGCR2/IDD isoform X3
XM_054245974.1 → XP_054101949.1 integral membrane protein DGCR2/IDD isoform X1

UniProtKB/TrEMBL

U3DS73