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GRN granulin precursor [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100404397, updated on 8-Mar-2024

Summary

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Gene symbol
GRN
Gene description
granulin precursor
See related
Ensembl:ENSCJAG00000009903
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See GRN in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 5 NC_071446.1 (67313625..67320602)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 5 NC_048387.1 (69931702..69938783)

Chromosome 5 - NC_071446.1Genomic Context describing neighboring genes Neighboring gene RUN domain containing 3A Neighboring gene solute carrier family 25 member 39 Neighboring gene family with sequence similarity 171 member A2 Neighboring gene integrin subunit alpha 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of the first marmoset-specific DNA microarray (EUMAMA): a new genetic tool for large-scale expression profiling in a non-human primate. Datson NA, et al. BMC Genomics, 2007 Jun 25. PMID 17592630, Free PMC Article
  2. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
progranulin
Names
granulin precursor-like protein
granulins

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071446.1 Reference mCalJa1.2.pat.X

    Range
    67313625..67320602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035303064.2 → XP_035158955.1  progranulin

    UniProtKB/TrEMBL
    F7GJW3, U3CZE1
    Conserved Domains (3) summary
    smart00277
    Location:284 → 334
    GRAN; Granulin
    pfam00396
    Location:376 → 414
    Granulin
    cl02546
    Location:62 → 112
    Granulin

  2. XM_054256993.1 → XP_054112968.1  progranulin

    UniProtKB/TrEMBL
    F7GJW3, U3CZE1

  3. XM_035303065.2 → XP_035158956.1  progranulin

    UniProtKB/TrEMBL
    F7GJW3, U3CZE1
    Conserved Domains (3) summary
    smart00277
    Location:284 → 334
    GRAN; Granulin
    pfam00396
    Location:376 → 414
    Granulin
    cl02546
    Location:62 → 112
    Granulin
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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