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CPT1B carnitine palmitoyltransferase 1B [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100403864, updated on 10-Oct-2024

Summary

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Gene symbol
CPT1B
Gene description
carnitine palmitoyltransferase 1B
See related
Ensembl:ENSCJAG00000018317
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See CPT1B in Genome Data Viewer
Location:
chromosome: 1
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 1 NC_071442.1 (216660567..216671088, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 1 NC_048383.1 (217751199..217761745, complement)

Chromosome 1 - NC_071442.1Genomic Context describing neighboring genes Neighboring gene kelch domain containing 7B Neighboring gene synaptonemal complex central element protein 3 Neighboring gene uncharacterized LOC103787986 Neighboring gene choline kinase beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carnitine O-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carnitine O-palmitoyltransferase 1, muscle isoform

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071442.1 Reference mCalJa1.2.pat.X

    Range
    216660567..216671088 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008980805.4 → XP_008979053.2  carnitine O-palmitoyltransferase 1, muscle isoform isoform X1

    UniProtKB/TrEMBL
    F6SEP7

  2. XM_008980788.4 → XP_008979036.2  carnitine O-palmitoyltransferase 1, muscle isoform isoform X1

    UniProtKB/TrEMBL
    F6SEP7

  3. XM_008980815.4 → XP_008979063.2  carnitine O-palmitoyltransferase 1, muscle isoform isoform X2

  4. XM_008980803.3 → XP_008979051.2  carnitine O-palmitoyltransferase 1, muscle isoform isoform X1

    UniProtKB/TrEMBL
    F6SEP7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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