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IKZF2 IKAROS family zinc finger 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100403694, updated on 10-Oct-2024

Summary

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Gene symbol
IKZF2
Gene description
IKAROS family zinc finger 2
See related
Ensembl:ENSCJAG00000011409
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See IKZF2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 6 NC_071447.1 (131210833..131381539, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 6 NC_048388.1 (132420733..132591428, complement)

Chromosome 6 - NC_071447.1Genomic Context describing neighboring genes Neighboring gene erb-b2 receptor tyrosine kinase 4 Neighboring gene PC-esterase domain-containing protein 1B-like Neighboring gene uncharacterized LOC118154659 Neighboring gene sperm associated antigen 16 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein Helios

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071447.1 Reference mCalJa1.2.pat.X

    Range
    131210833..131381539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035305604.2 → XP_035161495.1  zinc finger protein Helios isoform X1

    UniProtKB/TrEMBL
    F6PVQ0
    Conserved Domains (2) summary
    sd00017
    Location:121 → 141
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:161 → 186
    zf-H2C2_2; Zinc-finger double domain

  2. XM_008999422.3 → XP_008997670.1  zinc finger protein Helios isoform X4

    See identical proteins and their annotated locations for XP_008997670.1

    UniProtKB/TrEMBL
    F6PVQ0, F6PVT5, U3B8I2
    Conserved Domains (2) summary
    sd00017
    Location:114 → 134
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:154 → 179
    zf-H2C2_2; Zinc-finger double domain

  3. XM_008999420.4 → XP_008997668.1  zinc finger protein Helios isoform X3

    See identical proteins and their annotated locations for XP_008997668.1

    UniProtKB/TrEMBL
    F6PVQ0
    Conserved Domains (2) summary
    sd00017
    Location:115 → 135
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:155 → 180
    zf-H2C2_2; Zinc-finger double domain

  4. XM_035305606.2 → XP_035161497.1  zinc finger protein Helios isoform X3

    UniProtKB/TrEMBL
    F6PVQ0
    Conserved Domains (2) summary
    sd00017
    Location:115 → 135
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:155 → 180
    zf-H2C2_2; Zinc-finger double domain

  5. XM_054257911.1 → XP_054113886.1  zinc finger protein Helios isoform X9

  6. XM_054257910.1 → XP_054113885.1  zinc finger protein Helios isoform X8

  7. XM_035305608.2 → XP_035161499.1  zinc finger protein Helios isoform X5

    UniProtKB/TrEMBL
    F6PVQ0
    Conserved Domains (3) summary
    COG5048
    Location:114 → 188
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:123 → 143
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:135 → 160
    zf-H2C2_2; Zinc-finger double domain

  8. XM_035305609.2 → XP_035161500.1  zinc finger protein Helios isoform X6

    UniProtKB/TrEMBL
    F6PVQ0
    Conserved Domains (3) summary
    COG5048
    Location:113 → 187
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:122 → 142
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:134 → 159
    zf-H2C2_2; Zinc-finger double domain

  9. XM_035305605.2 → XP_035161496.1  zinc finger protein Helios isoform X2

    UniProtKB/TrEMBL
    F6PVQ0
    Conserved Domains (2) summary
    sd00017
    Location:120 → 140
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:160 → 185
    zf-H2C2_2; Zinc-finger double domain

  10. XM_035305607.2 → XP_035161498.1  zinc finger protein Helios isoform X4

    UniProtKB/TrEMBL
    F6PVQ0, F6PVT5, U3B8I2
    Conserved Domains (2) summary
    sd00017
    Location:114 → 134
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:154 → 179
    zf-H2C2_2; Zinc-finger double domain

  11. XM_054257909.1 → XP_054113884.1  zinc finger protein Helios isoform X7

    UniProtKB/TrEMBL
    A0A8I3WDV1
Nucleotide Protein
Heading Accession and Version

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