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CHST6 carbohydrate sulfotransferase 6 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100403035, updated on 8-Mar-2024

Summary

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Gene symbol
CHST6
Gene description
carbohydrate sulfotransferase 6
See related
Ensembl:ENSCJAG00000014281
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human all
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Genomic context

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See CHST6 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 20 NC_071461.1 (29492953..29515897, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 20 NC_048402.1 (30495299..30513234, complement)

Chromosome 20 - NC_071461.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 170A Neighboring gene small nucleolar RNA SNORA70 Neighboring gene high mobility group protein B1-like Neighboring gene transmembrane protein 231-like Neighboring gene carbohydrate sulfotransferase 5 Neighboring gene transmembrane protein 231

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 6
Names
carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071461.1 Reference mCalJa1.2.pat.X

    Range
    29492953..29515897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008986224.4 → XP_008984472.1  carbohydrate sulfotransferase 6

    See identical proteins and their annotated locations for XP_008984472.1

    UniProtKB/TrEMBL
    F7ITB0, U3C6I3, U3DXI4
    Related
    ENSCJAP00000026253.1
    Conserved Domains (1) summary
    pfam13469
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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