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BNC2 basonuclin zinc finger protein 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100402170, updated on 6-Jun-2024

Summary

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Gene symbol
BNC2
Gene description
basonuclin zinc finger protein 2
See related
Ensembl:ENSCJAG00000012578
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See BNC2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 1 NC_071442.1 (119939639..120396094, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 1 NC_048383.1 (121292627..121748505, complement)

Chromosome 1 - NC_071442.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 171 Neighboring gene 10 kDa heat shock protein, mitochondrial-like Neighboring gene uncharacterized LOC103793209 Neighboring gene uncharacterized LOC128932173 Neighboring gene centlein Neighboring gene uncharacterized LOC128932176

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein basonuclin-2
Names
basonuclin 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071442.1 Reference mCalJa1.2.pat.X

    Range
    119939639..120396094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054256346.1 → XP_054112321.1  zinc finger protein basonuclin-2 isoform X7

    UniProtKB/TrEMBL
    A0A2R8MZU7

  2. XM_035306273.2 → XP_035162164.1  zinc finger protein basonuclin-2 isoform X15

    UniProtKB/TrEMBL
    F7IIF5
    Conserved Domains (1) summary
    sd00017
    Location:950 → 971
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_054256331.1 → XP_054112306.1  zinc finger protein basonuclin-2 isoform X2

    UniProtKB/TrEMBL
    A0A2R8MZU7

  4. XM_054256362.1 → XP_054112337.1  zinc finger protein basonuclin-2 isoform X10

    UniProtKB/TrEMBL
    A0A2R8MZU7

  5. XM_035306242.2 → XP_035162133.1  zinc finger protein basonuclin-2 isoform X6

    UniProtKB/TrEMBL
    A0A2R8MZU7
    Conserved Domains (1) summary
    sd00017
    Location:1059 → 1080
    ZF_C2H2; C2H2 Zn finger [structural motif]

  6. XM_008997241.5 → XP_008995489.1  zinc finger protein basonuclin-2 isoform X9

    See identical proteins and their annotated locations for XP_008995489.1

    UniProtKB/TrEMBL
    A0A2R8MV80, F7IDP4
    Related
    ENSCJAP00000023052.1
    Conserved Domains (1) summary
    sd00017
    Location:1037 → 1058
    ZF_C2H2; C2H2 Zn finger [structural motif]

  7. XM_054256368.1 → XP_054112343.1  zinc finger protein basonuclin-2 isoform X11

    UniProtKB/TrEMBL
    A0A2R8MZU7

  8. XM_054256370.1 → XP_054112345.1  zinc finger protein basonuclin-2 isoform X12

    UniProtKB/TrEMBL
    A0A2R8MV80

  9. XM_054256371.1 → XP_054112346.1  zinc finger protein basonuclin-2 isoform X13

    UniProtKB/TrEMBL
    A0A2R8MV80

  10. XM_054256336.1 → XP_054112311.1  zinc finger protein basonuclin-2 isoform X4

    UniProtKB/TrEMBL
    A0A2R8MV80

  11. XM_054256330.1 → XP_054112305.1  zinc finger protein basonuclin-2 isoform X1

    UniProtKB/TrEMBL
    A0A2R8MZU7

  12. XM_054256334.1 → XP_054112309.1  zinc finger protein basonuclin-2 isoform X3

    UniProtKB/TrEMBL
    A0A2R8MV80

  13. XM_054256339.1 → XP_054112314.1  zinc finger protein basonuclin-2 isoform X5

    UniProtKB/TrEMBL
    A0A2R8MZU7

  14. XM_054256351.1 → XP_054112326.1  zinc finger protein basonuclin-2 isoform X8

    UniProtKB/TrEMBL
    A0A2R8MV80

  15. XM_054256374.1 → XP_054112349.1  zinc finger protein basonuclin-2 isoform X16

    UniProtKB/TrEMBL
    F7IIF5

  16. XM_035306283.2 → XP_035162174.1  zinc finger protein basonuclin-2 isoform X17

    UniProtKB/TrEMBL
    F7IIF5
    Conserved Domains (2) summary
    sd00017
    Location:885 → 906
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:661 → 682
    ZF_C2H2; C2H2 Zn finger [structural motif]

  17. XM_035306269.2 → XP_035162160.1  zinc finger protein basonuclin-2 isoform X14

    UniProtKB/TrEMBL
    A0A2R8MZU7, F7IG19
    Conserved Domains (1) summary
    sd00017
    Location:960 → 981
    ZF_C2H2; C2H2 Zn finger [structural motif]

  18. XM_035306294.2 → XP_035162185.1  zinc finger protein basonuclin-2 isoform X17

    UniProtKB/TrEMBL
    F7IIF5
    Conserved Domains (2) summary
    sd00017
    Location:885 → 906
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:661 → 682
    ZF_C2H2; C2H2 Zn finger [structural motif]

  19. XM_054256384.1 → XP_054112359.1  zinc finger protein basonuclin-2 isoform X19

  20. XM_054256386.1 → XP_054112361.1  zinc finger protein basonuclin-2 isoform X20

  21. XM_054256382.1 → XP_054112357.1  zinc finger protein basonuclin-2 isoform X18

    UniProtKB/TrEMBL
    A0A2R8MV80
Nucleotide Protein
Heading Accession and Version

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