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MMS19 MMS19 homolog, cytosolic iron-sulfur assembly component [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100401295, updated on 19-Jun-2024

Summary

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Gene symbol
MMS19
Gene description
MMS19 homolog, cytosolic iron-sulfur assembly component
See related
Ensembl:ENSCJAG00000016651
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See MMS19 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 12 NC_071453.1 (86928883..86970776, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 12 NC_048394.1 (87650397..87692239, complement)

Chromosome 12 - NC_071453.1Genomic Context describing neighboring genes Neighboring gene exosome component 1 Neighboring gene zinc finger DHHC-type palmitoyltransferase 16 Neighboring gene ubiquitin domain containing 1 Neighboring gene ankyrin repeat domain 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in iron-sulfur cluster assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein maturation by iron-sulfur cluster transfer IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MMXD complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of cytosolic [4Fe-4S] assembly targeting complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MMS19 nucleotide excision repair protein homolog
Names
MMS19 nucleotide excision repair homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071453.1 Reference mCalJa1.2.pat.X

    Range
    86928883..86970776 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035268656.2 → XP_035124547.1  MMS19 nucleotide excision repair protein homolog isoform X2

    UniProtKB/TrEMBL
    A0A8I4A2R7
    Conserved Domains (2) summary
    pfam12460
    Location:554 → 961
    MMS19_C; RNAPII transcription regulator C-terminal
    pfam14500
    Location:53 → 311
    MMS19_N; Dos2-interacting transcription regulator of RNA-Pol-II

  2. XM_035268657.2 → XP_035124548.1  MMS19 nucleotide excision repair protein homolog isoform X3

    UniProtKB/TrEMBL
    A0A8I3WXU7, A0A8I4A2R7
    Conserved Domains (2) summary
    pfam12460
    Location:555 → 910
    MMS19_C; RNAPII transcription regulator C-terminal
    pfam14500
    Location:53 → 311
    MMS19_N; Dos2-interacting transcription regulator of RNA-Pol-II

  3. XM_009010096.4 → XP_009008344.1  MMS19 nucleotide excision repair protein homolog isoform X1

    See identical proteins and their annotated locations for XP_009008344.1

    UniProtKB/TrEMBL
    A0A8I4A2R7, F6W7W4, U3C261
    Related
    ENSCJAP00000030760.2
    Conserved Domains (2) summary
    pfam12460
    Location:555 → 962
    MMS19_C; RNAPII transcription regulator C-terminal
    pfam14500
    Location:53 → 311
    MMS19_N; Dos2-interacting transcription regulator of RNA-Pol-II
Nucleotide Protein
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