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WNT5A Wnt family member 5A [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100401066, updated on 10-Oct-2024

Summary

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Gene symbol
WNT5A
Gene description
Wnt family member 5A
See related
Ensembl:ENSCJAG00000007750
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See WNT5A in Genome Data Viewer
Location:
chromosome: 15
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 15 NC_071456.1 (31712664..31732788, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 15 NC_048397.1 (32393307..32414801, complement)

Chromosome 15 - NC_071456.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118147803 Neighboring gene uncharacterized LOC128929816 Neighboring gene ELKS/RAB6-interacting/CAST family member 2 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC118147750

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables frizzled binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Wnt-5a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071456.1 Reference mCalJa1.2.pat.X

    Range
    31712664..31732788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002758441.5 → XP_002758487.1  protein Wnt-5a isoform X2

    See identical proteins and their annotated locations for XP_002758487.1

    UniProtKB/TrEMBL
    A0A8I3WD62, F7I9E2, F7I9H1
    Related
    ENSCJAP00000014380.1
    Conserved Domains (1) summary
    cd19347
    Location:69 → 380
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  2. XM_054245766.1 → XP_054101741.1  protein Wnt-5a isoform X3

    UniProtKB/TrEMBL
    A0A8I3WLG6

  3. XM_035275864.2 → XP_035131755.1  protein Wnt-5a isoform X3

    UniProtKB/TrEMBL
    A0A8I3WD62, A0A8I3WLG6
    Conserved Domains (1) summary
    cd19347
    Location:54 → 365
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  4. XM_054245765.1 → XP_054101740.1  protein Wnt-5a isoform X1

    UniProtKB/TrEMBL
    A0A8I4A5C6

  5. XM_035275865.2 → XP_035131756.1  protein Wnt-5a isoform X3

    UniProtKB/TrEMBL
    A0A8I3WD62, A0A8I3WLG6
    Conserved Domains (1) summary
    cd19347
    Location:54 → 365
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins
Nucleotide Protein
Heading Accession and Version

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