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HEPH hephaestin [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100400146, updated on 10-Oct-2024

Summary

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Gene symbol
HEPH
Gene description
hephaestin
See related
Ensembl:ENSCJAG00000001469
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See HEPH in Genome Data Viewer
Location:
chromosome: X
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) X NC_071464.1 (60098047..60226607)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) X NC_048405.1 (61522753..61651300)

Chromosome X - NC_071464.1Genomic Context describing neighboring genes Neighboring gene ataxin-7-like protein 3 Neighboring gene eukaryotic translation initiation factor 4B-like Neighboring gene E3 ubiquitin-protein ligase AMFR-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in iron ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hephaestin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071464.1 Reference mCalJa1.2.pat.X

    Range
    60098047..60226607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002762951.6 → XP_002762997.4  hephaestin isoform X1

    UniProtKB/TrEMBL
    A0A2R8MPR8, F7HXE7, F7HZT4

  2. XM_054251437.1 → XP_054107412.1  hephaestin isoform X2

  3. XM_054251439.1 → XP_054107414.1  hephaestin isoform X4

    UniProtKB/TrEMBL
    A0A2R8MAI9

  4. XM_054251441.1 → XP_054107416.1  hephaestin isoform X5

  5. XM_054251438.1 → XP_054107413.1  hephaestin isoform X3

    UniProtKB/TrEMBL
    A0A5K1TVT7

  6. XM_054251436.1 → XP_054107411.1  hephaestin isoform X1

    UniProtKB/TrEMBL
    A0A2R8MPR8, F7HXE7, F7HZT4

  7. XM_054251440.1 → XP_054107415.1  hephaestin isoform X4

    UniProtKB/TrEMBL
    A0A2R8MAI9

  8. XM_054251433.1 → XP_054107408.1  hephaestin isoform X1

    UniProtKB/TrEMBL
    A0A2R8MPR8, F7HXE7, F7HZT4

  9. XM_054251435.1 → XP_054107410.1  hephaestin isoform X1

    UniProtKB/TrEMBL
    A0A2R8MPR8, F7HXE7, F7HZT4

  10. XM_054251434.1 → XP_054107409.1  hephaestin isoform X1

    UniProtKB/TrEMBL
    A0A2R8MPR8, F7HXE7, F7HZT4
Nucleotide Protein
Heading Accession and Version

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