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INPP5D inositol polyphosphate-5-phosphatase D [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100400043, updated on 8-Mar-2024

Summary

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Gene symbol
INPP5D
Gene description
inositol polyphosphate-5-phosphatase D
See related
Ensembl:ENSCJAG00000013979
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See INPP5D in Genome Data Viewer
Location:
chromosome: 6
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 6 NC_071447.1 (150904927..151055167)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 6 NC_048388.1 (152128378..152276915)

Chromosome 6 - NC_071447.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene neuraminidase 2 Neighboring gene uncharacterized LOC118154697 Neighboring gene autophagy related 16 like 1 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene small Cajal body-specific RNA 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071447.1 Reference mCalJa1.2.pat.X

    Range
    150904927..151055167
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035306081.2 → XP_035161972.1  phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1

    UniProtKB/TrEMBL
    A0A8J8XHQ2, F7AZ21, U3DUB1
    Conserved Domains (3) summary
    cd09100
    Location:403 → 709
    INPP5c_SHIP1-INPP5D; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of SH2 domain containing inositol polyphosphate 5-phosphatase-1 and related proteins
    cd10343
    Location:1 → 102
    SH2_SHIP; Src homology 2 (SH2) domain found in SH2-containing inositol-5'-phosphatase (SHIP) and SLAM-associated protein (SAP)
    PHA03247
    Location:917 → 1123
    PHA03247; large tegument protein UL36; Provisional
Nucleotide Protein
Heading Accession and Version

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