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POLR2B RNA polymerase II subunit B [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100398671, updated on 8-Mar-2024

Summary

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Gene symbol
POLR2B
Gene description
RNA polymerase II subunit B
See related
Ensembl:ENSCJAG00000004118
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See POLR2B in Genome Data Viewer
Location:
chromosome: 3
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 3 NC_071444.1 (135919762..135983846, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 3 NC_048385.1 (138495790..138559057, complement)

Chromosome 3 - NC_071444.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene insulin like growth factor binding protein 7 Neighboring gene ubiquitin-conjugating enzyme E2 C-like Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA U13 Neighboring gene nitric oxide associated 1 Neighboring gene RE1 silencing transcription factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribonucleoside binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB2
Names
polymerase (RNA) II (DNA directed) polypeptide B, 140kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071444.1 Reference mCalJa1.2.pat.X

    Range
    135919762..135983846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002745805.6 → XP_002745851.1  DNA-directed RNA polymerase II subunit RPB2 isoform X1

    See identical proteins and their annotated locations for XP_002745851.1

    UniProtKB/TrEMBL
    F6PQF5, U3EIW2
    Related
    ENSCJAP00000007614.2
    Conserved Domains (1) summary
    PRK08565
    Location:27 → 1172
    PRK08565; DNA-directed RNA polymerase subunit B; Provisional

  2. XM_008993265.4 → XP_008991513.1  DNA-directed RNA polymerase II subunit RPB2 isoform X2

    See identical proteins and their annotated locations for XP_008991513.1

    UniProtKB/TrEMBL
    F6PQF5
    Related
    ENSCJAP00000045880.1
    Conserved Domains (1) summary
    PRK08565
    Location:7 → 1097
    PRK08565; DNA-directed RNA polymerase subunit B; Provisional
Nucleotide Protein
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