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HS6ST2 heparan sulfate 6-O-sulfotransferase 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100398118, updated on 10-Oct-2024

Summary

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Gene symbol
HS6ST2
Gene description
heparan sulfate 6-O-sulfotransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See HS6ST2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) X NC_071464.1 (124102142..124423234, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) X NC_048405.1 (125506110..125827199, complement)

Chromosome X - NC_071464.1Genomic Context describing neighboring genes Neighboring gene RAP2C, member of RAS oncogene family Neighboring gene muscleblind like splicing regulator 3 Neighboring gene 40S ribosomal protein S6-like Neighboring gene uncharacterized LOC118150619 Neighboring gene heterogeneous nuclear ribonucleoprotein F-like Neighboring gene ubiquitin specific peptidase 26

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071464.1 Reference mCalJa1.2.pat.X

    Range
    124102142..124423234 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008989907.4 → XP_008988155.1  heparan-sulfate 6-O-sulfotransferase 2 isoform X4

    See identical proteins and their annotated locations for XP_008988155.1

    UniProtKB/TrEMBL
    F6S5W7, U3BRG2, U3CB80
    Conserved Domains (1) summary
    pfam03567
    Location:225 → 490
    Sulfotransfer_2; Sulfotransferase family

  2. XM_035289075.2 → XP_035144966.2  heparan-sulfate 6-O-sulfotransferase 2 isoform X2

  3. XM_035289076.2 → XP_035144967.1  heparan-sulfate 6-O-sulfotransferase 2 isoform X3

    UniProtKB/TrEMBL
    U3BRG2
    Conserved Domains (1) summary
    pfam03567
    Location:225 → 501
    Sulfotransfer_2; Sulfotransferase family

  4. XM_002763275.5 → XP_002763321.3  heparan-sulfate 6-O-sulfotransferase 2 isoform X1

    UniProtKB/TrEMBL
    F6S5X6

  5. XM_035289077.2 → XP_035144968.2  heparan-sulfate 6-O-sulfotransferase 2 isoform X5

  6. XM_035289078.2 → XP_035144969.2  heparan-sulfate 6-O-sulfotransferase 2 isoform X5

Nucleotide Protein
Heading Accession and Version

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