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ANGEL1 angel homolog 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100398030, updated on 8-Mar-2024

Summary

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Gene symbol
ANGEL1
Gene description
angel homolog 1
See related
Ensembl:ENSCJAG00000020726
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See ANGEL1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 10 NC_071451.1 (107607640..107649155, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 10 NC_048392.1 (108247907..108289380, complement)

Chromosome 10 - NC_071451.1Genomic Context describing neighboring genes Neighboring gene histone H1.8-like Neighboring gene uncharacterized LOC108593540 Neighboring gene vasohibin 1 Neighboring gene leucine rich repeat containing 74A Neighboring gene 40S ribosomal protein S26-like Neighboring gene interferon regulatory factor 2 binding protein like Neighboring gene CLOCK interacting pacemaker

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein angel homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071451.1 Reference mCalJa1.2.pat.X

    Range
    107607640..107649155 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035261124.2 → XP_035117015.1  protein angel homolog 1 isoform X1

    UniProtKB/TrEMBL
    U3F5Y4
    Conserved Domains (2) summary
    PLN03144
    Location:170 → 669
    PLN03144; Carbon catabolite repressor protein 4 homolog; Provisional
    cl00490
    Location:254 → 455
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  2. XM_035261125.2 → XP_035117016.1  protein angel homolog 1 isoform X1

    UniProtKB/TrEMBL
    U3F5Y4
    Conserved Domains (2) summary
    PLN03144
    Location:170 → 669
    PLN03144; Carbon catabolite repressor protein 4 homolog; Provisional
    cl00490
    Location:254 → 455
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  3. XM_002754145.5 → XP_002754191.2  protein angel homolog 1 isoform X2

    UniProtKB/TrEMBL
    F7I995, U3F007, U3F5Y4
    Conserved Domains (2) summary
    PLN03144
    Location:157 → 656
    PLN03144; Carbon catabolite repressor protein 4 homolog; Provisional
    cl00490
    Location:241 → 442
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  4. XM_035261130.2 → XP_035117021.1  protein angel homolog 1 isoform X4

    UniProtKB/TrEMBL
    U3F5Y4
    Conserved Domains (1) summary
    cl00490
    Location:241 → 442
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  5. XM_035261128.2 → XP_035117019.1  protein angel homolog 1 isoform X3

    UniProtKB/TrEMBL
    U3F5Y4
    Conserved Domains (2) summary
    PLN03144
    Location:111 → 610
    PLN03144; Carbon catabolite repressor protein 4 homolog; Provisional
    cl00490
    Location:195 → 396
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
Nucleotide Protein
Heading Accession and Version

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