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ANKFN1 ankyrin repeat and fibronectin type III domain containing 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100397259, updated on 10-Oct-2024

Summary

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Gene symbol
ANKFN1
Gene description
ankyrin repeat and fibronectin type III domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See ANKFN1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 5 NC_071446.1 (105859294..106311612, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 5 NC_048387.1 (108611185..109063263, complement)

Chromosome 5 - NC_071446.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118153827 Neighboring gene uncharacterized LOC118153826 Neighboring gene noggin Neighboring gene phosphatidylcholine transfer protein Neighboring gene transmembrane protein 100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in establishment of mitotic spindle orientation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of establishment of bipolar cell polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in spindle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and fibronectin type-III domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071446.1 Reference mCalJa1.2.pat.X

    Range
    105859294..106311612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035301147.2 → XP_035157038.2  ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A5F4VTN9

  2. XM_035301146.2 → XP_035157037.2  ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A5F4VTN9

  3. XM_035301145.2 → XP_035157036.2  ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I3WP18

  4. XM_017971729.4 → XP_017827218.3  ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform X3

    Conserved Domains (3) summary
    cd00063
    Location:271 → 362
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00045
    Location:137 → 171
    ANK; ANK repeat [structural motif]
    cl39094
    Location:141 → 194
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version

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