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TOE1 target of EGR1, exonuclease [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100397152, updated on 8-Mar-2024

Summary

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Gene symbol
TOE1
Gene description
target of EGR1, exonuclease
See related
Ensembl:ENSCJAG00000004716
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See TOE1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 7 NC_071448.1 (79127991..79131844)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 7 NC_048389.1 (80608106..80612451)

Chromosome 7 - NC_071448.1Genomic Context describing neighboring genes Neighboring gene 4-hydroxyphenylpyruvate dioxygenase like Neighboring gene mutY DNA glycosylase Neighboring gene small nucleolar RNA U13 Neighboring gene testis associated actin remodelling kinase 2 Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Cajal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
target of EGR1 protein 1
Names
target of EGR1, member 1 (nuclear)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071448.1 Reference mCalJa1.2.pat.X

    Range
    79127991..79131844
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009001114.4 → XP_008999362.1  target of EGR1 protein 1 isoform X1

    Conserved Domains (2) summary
    pfam00642
    Location:326 → 349
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam04857
    Location:39 → 286
    CAF1; CAF1 family ribonuclease

  2. XM_002750751.6 → XP_002750797.1  target of EGR1 protein 1 isoform X2

    See identical proteins and their annotated locations for XP_002750797.1

    UniProtKB/TrEMBL
    F7IFC9
    Related
    ENSCJAP00000008633.2
    Conserved Domains (1) summary
    pfam04857
    Location:39 → 257
    CAF1; CAF1 family ribonuclease

  3. XM_009001115.4 → XP_008999363.1  target of EGR1 protein 1 isoform X3

    Conserved Domains (1) summary
    pfam04857
    Location:2 → 240
    CAF1; CAF1 family ribonuclease
Nucleotide Protein
Heading Accession and Version

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