U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

NCK1 NCK adaptor protein 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100395287, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
NCK1
Gene description
NCK adaptor protein 1
See related
Ensembl:ENSCJAG00000002476
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See NCK1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 17 NC_071458.1 (40362652..40456610, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 17 NC_048399.1 (40522996..40617028, complement)

Chromosome 17 - NC_071458.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128929972 Neighboring gene U1 spliceosomal RNA Neighboring gene interleukin 20 receptor subunit beta Neighboring gene RAD51-associated protein 1-like Neighboring gene U6 spliceosomal RNA Neighboring gene ferritin heavy chain-like Neighboring gene solute carrier family 35 member G2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ephrin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of PERK-mediated unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translation in response to endoplasmic reticulum stress IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cytoplasmic protein NCK1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071458.1 Reference mCalJa1.2.pat.X

    Range
    40362652..40456610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017965835.3 → XP_017821324.2  cytoplasmic protein NCK1 isoform X1

    UniProtKB/TrEMBL
    F7CJT2, U3CBX5
    Conserved Domains (4) summary
    cd10408
    Location:280 → 376
    SH2_Nck1; Src homology 2 (SH2) domain found in Nck
    cd11900
    Location:3 → 61
    SH3_Nck1_1; First Src Homology 3 domain of Nck1 adaptor protein
    cd11901
    Location:108 → 162
    SH3_Nck1_2; Second Src Homology 3 domain of Nck1 adaptor protein
    cd11904
    Location:193 → 249
    SH3_Nck1_3; Third Src Homology 3 domain of Nck1 adaptor protein

  2. XM_035278448.2 → XP_035134339.1  cytoplasmic protein NCK1 isoform X1

    UniProtKB/TrEMBL
    F7CJT2, U3CBX5
    Conserved Domains (4) summary
    cd10408
    Location:280 → 376
    SH2_Nck1; Src homology 2 (SH2) domain found in Nck
    cd11900
    Location:3 → 61
    SH3_Nck1_1; First Src Homology 3 domain of Nck1 adaptor protein
    cd11901
    Location:108 → 162
    SH3_Nck1_2; Second Src Homology 3 domain of Nck1 adaptor protein
    cd11904
    Location:193 → 249
    SH3_Nck1_3; Third Src Homology 3 domain of Nck1 adaptor protein

  3. XM_035278444.2 → XP_035134335.1  cytoplasmic protein NCK1 isoform X1

    UniProtKB/TrEMBL
    F7CJT2, U3CBX5
    Conserved Domains (4) summary
    cd10408
    Location:280 → 376
    SH2_Nck1; Src homology 2 (SH2) domain found in Nck
    cd11900
    Location:3 → 61
    SH3_Nck1_1; First Src Homology 3 domain of Nck1 adaptor protein
    cd11901
    Location:108 → 162
    SH3_Nck1_2; Second Src Homology 3 domain of Nck1 adaptor protein
    cd11904
    Location:193 → 249
    SH3_Nck1_3; Third Src Homology 3 domain of Nck1 adaptor protein

  4. XM_035278442.2 → XP_035134333.1  cytoplasmic protein NCK1 isoform X1

    UniProtKB/TrEMBL
    F7CJT2, U3CBX5
    Conserved Domains (4) summary
    cd10408
    Location:280 → 376
    SH2_Nck1; Src homology 2 (SH2) domain found in Nck
    cd11900
    Location:3 → 61
    SH3_Nck1_1; First Src Homology 3 domain of Nck1 adaptor protein
    cd11901
    Location:108 → 162
    SH3_Nck1_2; Second Src Homology 3 domain of Nck1 adaptor protein
    cd11904
    Location:193 → 249
    SH3_Nck1_3; Third Src Homology 3 domain of Nck1 adaptor protein

  5. XM_035278445.2 → XP_035134336.1  cytoplasmic protein NCK1 isoform X1

    UniProtKB/TrEMBL
    F7CJT2, U3CBX5
    Conserved Domains (4) summary
    cd10408
    Location:280 → 376
    SH2_Nck1; Src homology 2 (SH2) domain found in Nck
    cd11900
    Location:3 → 61
    SH3_Nck1_1; First Src Homology 3 domain of Nck1 adaptor protein
    cd11901
    Location:108 → 162
    SH3_Nck1_2; Second Src Homology 3 domain of Nck1 adaptor protein
    cd11904
    Location:193 → 249
    SH3_Nck1_3; Third Src Homology 3 domain of Nck1 adaptor protein

  6. XM_035278443.2 → XP_035134334.1  cytoplasmic protein NCK1 isoform X1

    UniProtKB/TrEMBL
    F7CJT2, U3CBX5
    Conserved Domains (4) summary
    cd10408
    Location:280 → 376
    SH2_Nck1; Src homology 2 (SH2) domain found in Nck
    cd11900
    Location:3 → 61
    SH3_Nck1_1; First Src Homology 3 domain of Nck1 adaptor protein
    cd11901
    Location:108 → 162
    SH3_Nck1_2; Second Src Homology 3 domain of Nck1 adaptor protein
    cd11904
    Location:193 → 249
    SH3_Nck1_3; Third Src Homology 3 domain of Nck1 adaptor protein

  7. XM_035278449.2 → XP_035134340.1  cytoplasmic protein NCK1 isoform X2

    UniProtKB/TrEMBL
    U3DE41
    Conserved Domains (3) summary
    cd10408
    Location:216 → 312
    SH2_Nck1; Src homology 2 (SH2) domain found in Nck
    cd11901
    Location:44 → 98
    SH3_Nck1_2; Second Src Homology 3 domain of Nck1 adaptor protein
    cd11904
    Location:129 → 185
    SH3_Nck1_3; Third Src Homology 3 domain of Nck1 adaptor protein

  8. XM_035278446.2 → XP_035134337.1  cytoplasmic protein NCK1 isoform X1

    UniProtKB/TrEMBL
    F7CJT2, U3CBX5
    Conserved Domains (4) summary
    cd10408
    Location:280 → 376
    SH2_Nck1; Src homology 2 (SH2) domain found in Nck
    cd11900
    Location:3 → 61
    SH3_Nck1_1; First Src Homology 3 domain of Nck1 adaptor protein
    cd11901
    Location:108 → 162
    SH3_Nck1_2; Second Src Homology 3 domain of Nck1 adaptor protein
    cd11904
    Location:193 → 249
    SH3_Nck1_3; Third Src Homology 3 domain of Nck1 adaptor protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.