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CPSF2 cleavage and polyadenylation specific factor 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100395136, updated on 11-Apr-2024

Summary

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Gene symbol
CPSF2
Gene description
cleavage and polyadenylation specific factor 2
See related
Ensembl:ENSCJAG00000018069
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See CPSF2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 10 NC_071451.1 (122867563..122909767)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 10 NC_048392.1 (123538805..123580999)

Chromosome 10 - NC_071451.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128928861 Neighboring gene ataxin 3 Neighboring gene NADH:ubiquinone oxidoreductase subunit B1 Neighboring gene uncharacterized LOC128928863 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing by stem-loop binding and cleavage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage and polyadenylation specificity factor subunit 2
Names
cleavage and polyadenylation specific factor 2, 100kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071451.1 Reference mCalJa1.2.pat.X

    Range
    122867563..122909767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035261301.2 → XP_035117192.1  cleavage and polyadenylation specificity factor subunit 2 isoform X1

    UniProtKB/TrEMBL
    F6R015
    Conserved Domains (4) summary
    smart01027
    Location:261 → 386
    Beta-Casp; Beta-Casp domain
    cd16293
    Location:25 → 222
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
    pfam07521
    Location:547 → 609
    RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
    pfam13299
    Location:626 → 797
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

  2. XM_009006463.4 → XP_009004711.1  cleavage and polyadenylation specificity factor subunit 2 isoform X2

    See identical proteins and their annotated locations for XP_009004711.1

    UniProtKB/TrEMBL
    A0A8I3WIR8
    Related
    ENSCJAP00000033433.2
    Conserved Domains (4) summary
    smart01027
    Location:243 → 368
    Beta-Casp; Beta-Casp domain
    cd16293
    Location:7 → 204
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
    pfam07521
    Location:529 → 591
    RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
    pfam13299
    Location:608 → 779
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

  3. XM_035261304.2 → XP_035117195.1  cleavage and polyadenylation specificity factor subunit 2 isoform X2

    UniProtKB/TrEMBL
    A0A8I3WIR8
    Conserved Domains (4) summary
    smart01027
    Location:243 → 368
    Beta-Casp; Beta-Casp domain
    cd16293
    Location:7 → 204
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
    pfam07521
    Location:529 → 591
    RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
    pfam13299
    Location:608 → 779
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

  4. XM_035261302.2 → XP_035117193.1  cleavage and polyadenylation specificity factor subunit 2 isoform X1

    UniProtKB/TrEMBL
    F6R015
    Conserved Domains (4) summary
    smart01027
    Location:261 → 386
    Beta-Casp; Beta-Casp domain
    cd16293
    Location:25 → 222
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
    pfam07521
    Location:547 → 609
    RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
    pfam13299
    Location:626 → 797
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

  5. XM_035261303.2 → XP_035117194.1  cleavage and polyadenylation specificity factor subunit 2 isoform X2

    UniProtKB/TrEMBL
    A0A8I3WIR8
    Conserved Domains (4) summary
    smart01027
    Location:243 → 368
    Beta-Casp; Beta-Casp domain
    cd16293
    Location:7 → 204
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
    pfam07521
    Location:529 → 591
    RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
    pfam13299
    Location:608 → 779
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal
Nucleotide Protein
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