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ZFAND1 zinc finger AN1-type containing 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100395039, updated on 8-Mar-2024

Summary

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Gene symbol
ZFAND1
Gene description
zinc finger AN1-type containing 1
See related
Ensembl:ENSCJAG00000000421
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See ZFAND1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 16 NC_071457.1 (43323628..43343511)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 16 NC_048398.1 (43437544..43457794)

Chromosome 16 - NC_071457.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 16 Neighboring gene uncharacterized LOC128929848 Neighboring gene charged multivesicular body protein 4C Neighboring gene solute carrier family 10 member 5 Neighboring gene inositol monophosphatase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in stress granule disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AN1-type zinc finger protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071457.1 Reference mCalJa1.2.pat.X

    Range
    43323628..43343511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008982837.4 → XP_008981085.1  AN1-type zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A5F4WCN6, A0A8I3XDN6
    Conserved Domains (1) summary
    pfam01428
    Location:10 → 46
    zf-AN1; AN1-like Zinc finger

  2. XM_002759034.6 → XP_002759080.1  AN1-type zinc finger protein 1 isoform X4

    See identical proteins and their annotated locations for XP_002759080.1

    UniProtKB/TrEMBL
    A0A8I3XDN6, F6SE90
    Related
    ENSCJAP00000000718.2
    Conserved Domains (1) summary
    pfam01428
    Location:10 → 46
    zf-AN1; AN1-like Zinc finger

  3. XM_054246417.1 → XP_054102392.1  AN1-type zinc finger protein 1 isoform X6

  4. XM_035277569.2 → XP_035133460.1  AN1-type zinc finger protein 1 isoform X1

    Conserved Domains (1) summary
    pfam01428
    Location:104 → 140
    zf-AN1; AN1-like Zinc finger

  5. XM_035277570.2 → XP_035133461.1  AN1-type zinc finger protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I3W1A5
    Conserved Domains (1) summary
    pfam01428
    Location:104 → 140
    zf-AN1; AN1-like Zinc finger

  6. XM_035277571.2 → XP_035133462.1  AN1-type zinc finger protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8I3XDN6
    Conserved Domains (1) summary
    pfam01428
    Location:50 → 86
    zf-AN1; AN1-like Zinc finger
Nucleotide Protein
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