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POFUT1 protein O-fucosyltransferase 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100394836, updated on 8-Mar-2024

Summary

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Gene symbol
POFUT1
Gene description
protein O-fucosyltransferase 1
See related
Ensembl:ENSCJAG00000020721
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See POFUT1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 5 NC_071446.1 (4882849..4914152, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 5 NC_048387.1 (4795730..4827024, complement)

Chromosome 5 - NC_071446.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene kinesin family member 3B Neighboring gene U6 spliceosomal RNA Neighboring gene PLAG1 like zinc finger 2 Neighboring gene putative testis-specific Y-encoded-like protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptide-O-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GDP-fucose protein O-fucosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071446.1 Reference mCalJa1.2.pat.X

    Range
    4882849..4914152 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008995557.4 → XP_008993805.3  GDP-fucose protein O-fucosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    F7I971, U3F0X2
    Conserved Domains (1) summary
    cd11302
    Location:30 → 379
    O-FucT-1; GDP-fucose protein O-fucosyltransferase 1

  2. XM_035298133.2 → XP_035154024.1  GDP-fucose protein O-fucosyltransferase 1 isoform X3

    Conserved Domains (1) summary
    cd11302
    Location:1 → 271
    O-FucT-1; GDP-fucose protein O-fucosyltransferase 1

  3. XM_035298132.2 → XP_035154023.1  GDP-fucose protein O-fucosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I3ZYI2
    Conserved Domains (1) summary
    cd11302
    Location:30 → 324
    O-FucT-1; GDP-fucose protein O-fucosyltransferase 1
Nucleotide Protein
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Gene LinkOut

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