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LOC100394816 N-deacetylase and N-sulfotransferase 3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100394816, updated on 2-Nov-2023

Summary

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Gene symbol
LOC100394816
Gene description
N-deacetylase and N-sulfotransferase 3
See related
Ensembl:ENSCJAG00000003390
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Also known as
NDST3
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Genomic context

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See LOC100394816 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 3 NC_071444.1 (75128898..75332255, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 3 NC_048385.1 (77735191..77938895, complement)

Chromosome 3 - NC_071444.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100894398 Neighboring gene small nucleolar RNA SNORA24 Neighboring gene KRAB domain-containing protein 1-like Neighboring gene Wilms tumor protein 1-interacting protein-like Neighboring gene uncharacterized LOC108590926 Neighboring gene uncharacterized LOC118152216

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3
Names
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071444.1 Reference mCalJa1.2.pat.X

    Range
    75128898..75332255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008992776.4 → XP_008991024.2  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A8I3WU65
    Conserved Domains (2) summary
    pfam00685
    Location:595 → 824
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 506
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_002745449.5 → XP_002745495.2  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 isoform X2

    UniProtKB/TrEMBL
    A0A8I3WU65, F7GWC2, U3F0K8
    Conserved Domains (2) summary
    pfam00685
    Location:595 → 846
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 506
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_035293059.2 → XP_035148950.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 isoform X3

    Conserved Domains (2) summary
    pfam00685
    Location:309 → 538
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:41 → 220
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
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