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CNOT8 CCR4-NOT transcription complex subunit 8 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100394202, updated on 11-Apr-2024

Summary

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Gene symbol
CNOT8
Gene description
CCR4-NOT transcription complex subunit 8
See related
Ensembl:ENSCJAG00000007417
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See CNOT8 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 2 NC_071443.1 (52140887..52158340)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 2 NC_048384.1 (52412468..52429928)

Chromosome 2 - NC_071443.1Genomic Context describing neighboring genes Neighboring gene La ribonucleoprotein 1, translational regulator Neighboring gene translation initiation factor IF-2-like Neighboring gene fatty acid hydroxylase domain containing 2 Neighboring gene small nucleolar RNA U13 Neighboring gene gem nuclear organelle associated protein 5 Neighboring gene mitochondrial ribosomal protein L22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071443.1 Reference mCalJa1.2.pat.X

    Range
    52140887..52158340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035289382.2 → XP_035145273.1  CCR4-NOT transcription complex subunit 8 isoform X2

    Conserved Domains (1) summary
    cl23804
    Location:48 → 207
    CAF1; CAF1 family ribonuclease

  2. XM_035289390.2 → XP_035145281.1  CCR4-NOT transcription complex subunit 8 isoform X3

    UniProtKB/TrEMBL
    A0A8I3WG72
    Conserved Domains (1) summary
    cl23804
    Location:1 → 157
    CAF1; CAF1 family ribonuclease

  3. XM_054251064.1 → XP_054107039.1  CCR4-NOT transcription complex subunit 8 isoform X3

    UniProtKB/TrEMBL
    A0A8I3WG72

  4. XM_002744427.6 → XP_002744473.1  CCR4-NOT transcription complex subunit 8 isoform X1

    See identical proteins and their annotated locations for XP_002744473.1

    UniProtKB/TrEMBL
    F7BVW8, F7HP79
    Conserved Domains (1) summary
    cl23804
    Location:1 → 263
    CAF1; CAF1 family ribonuclease
Nucleotide Protein
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