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DDX27 DEAD-box helicase 27 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100393874, updated on 8-Mar-2024

Summary

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Gene symbol
DDX27
Gene description
DEAD-box helicase 27
See related
Ensembl:ENSCJAG00000016135
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See DDX27 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 5 NC_071446.1 (42298324..42320770)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 5 NC_048387.1 (42224132..42246597)

Chromosome 5 - NC_071446.1Genomic Context describing neighboring genes Neighboring gene staufen double-stranded RNA binding protein 1 Neighboring gene iron-sulfur cluster assembly 1 homolog, mitochondrial-like Neighboring gene U2 spliceosomal RNA Neighboring gene zinc finger NFX1-type containing 1 Neighboring gene uncharacterized LOC103791176 Neighboring gene small nucleolar SNORD12/SNORD106

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX27

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071446.1 Reference mCalJa1.2.pat.X

    Range
    42298324..42320770
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002747633.6 → XP_002747679.4  probable ATP-dependent RNA helicase DDX27

    UniProtKB/TrEMBL
    F7INX1
    Conserved Domains (2) summary
    COG0513
    Location:187 → 642
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17947
    Location:197 → 392
    DEADc_DDX27; DEAD-box helicase domain of DEAD box protein 27
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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