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LYZ lysozyme [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100393686, updated on 8-Mar-2024

Summary

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Gene symbol
LYZ
Gene description
lysozyme
See related
Ensembl:ENSCJAG00000001788
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Also known as
LZM; LYZF1
Orthologs
human all
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Genomic context

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See LYZ in Genome Data Viewer
Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 9 NC_071450.1 (68287304..68293172)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 9 NC_048391.1 (69408831..69414713)

Chromosome 9 - NC_071450.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene adenosylhomocysteinase-like Neighboring gene YEATS domain containing 4 Neighboring gene melanoma inhibitory activity protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Episodic adaptive evolution of primate lysozymes. Messier W, et al. Nature, 1997 Jan 9. PMID 8990116
  2. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysozyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to Gram-negative bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to Gram-positive bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysozyme C
Names
1,4-beta-N-acetylmuramidase C
lysozyme F1
lysozyme c
XP_002752792.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071450.1 Reference mCalJa1.2.pat.X

    Range
    68287304..68293172
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002752746.4 → XP_002752792.1  lysozyme C

    See identical proteins and their annotated locations for XP_002752792.1

    UniProtKB/Swiss-Prot
    P79158
    UniProtKB/TrEMBL
    A0A8I3WWR5, U3FDD0
    Related
    ENSCJAP00000003201.2
    Conserved Domains (1) summary
    smart00263
    Location:19 → 147
    LYZ1; Alpha-lactalbumin / lysozyme C
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P79158.1 GenPept UniProtKB/Swiss-Prot:P79158

Gene LinkOut

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