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SLC12A9 solute carrier family 12 member 9 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100393593, updated on 8-Mar-2024

Summary

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Gene symbol
SLC12A9
Gene description
solute carrier family 12 member 9
See related
Ensembl:ENSCJAG00000014963
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See SLC12A9 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 2 NC_071443.1 (10918192..10934336, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 2 NC_048384.1 (11232829..11260801, complement)

Chromosome 2 - NC_071443.1Genomic Context describing neighboring genes Neighboring gene serrate, RNA effector molecule Neighboring gene thyroid hormone receptor interactor 6 Neighboring gene EPH receptor B4 Neighboring gene zonadhesin Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables potassium:chloride symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell volume homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chloride ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in potassium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in potassium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: solute carrier family 12 member 9
Names
solute carrier family 12 (potassium/chloride transporters), member 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071443.1 Reference mCalJa1.2.pat.X

    Range
    10918192..10934336 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035280834.2 → XP_035136725.1  LOW QUALITY PROTEIN: solute carrier family 12 member 9

    UniProtKB/TrEMBL
    F6R3D8, U3FX75
    Conserved Domains (1) summary
    TIGR00930
    Location:36 → 905
    2a30; K-Cl cotransporter
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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