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CPEB3 cytoplasmic polyadenylation element binding protein 3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100392612, updated on 18-Sep-2024

Summary

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Gene symbol
CPEB3
Gene description
cytoplasmic polyadenylation element binding protein 3
See related
Ensembl:ENSCJAG00000008495
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See CPEB3 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 12 NC_071453.1 (81462465..81710913, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 12 NC_048394.1 (82185065..82433484, complement)

Chromosome 12 - NC_071453.1Genomic Context describing neighboring genes Neighboring gene ATP synthase membrane subunit K, mitochondrial Neighboring gene fibroblast growth factor binding protein 3 Neighboring gene B-TFIID TATA-box binding protein associated factor 1 Neighboring gene succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like Neighboring gene eukaryotic initiation factor 4A-I-like Neighboring gene prohibitin 1-like Neighboring gene membrane associated ring-CH-type finger 5 Neighboring gene developmental pluripotency-associated protein 4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA regulatory element binding translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation factor activity, RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytoplasmic polyadenylation element-binding protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071453.1 Reference mCalJa1.2.pat.X

    Range
    81462465..81710913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035268463.2 → XP_035124354.1  cytoplasmic polyadenylation element-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8I3W5Z0
    Conserved Domains (3) summary
    pfam16366
    Location:641 → 702
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:458 → 549
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:566 → 646
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  2. XM_009009967.4 → XP_009008215.1  cytoplasmic polyadenylation element-binding protein 3 isoform X4

    See identical proteins and their annotated locations for XP_009008215.1

    UniProtKB/TrEMBL
    A0A8I3X0L6, A0A8I3XDC5
    Conserved Domains (3) summary
    pfam16366
    Location:610 → 671
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:427 → 518
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:535 → 615
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  3. XM_035268466.2 → XP_035124357.1  cytoplasmic polyadenylation element-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8I3X0L6
    Conserved Domains (3) summary
    pfam16366
    Location:618 → 679
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:435 → 526
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:543 → 623
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  4. XM_035268464.2 → XP_035124355.1  cytoplasmic polyadenylation element-binding protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8I3W5Z0
    Conserved Domains (3) summary
    pfam16366
    Location:633 → 694
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:450 → 541
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:558 → 638
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  5. XM_009009961.4 → XP_009008209.1  cytoplasmic polyadenylation element-binding protein 3 isoform X1

    See identical proteins and their annotated locations for XP_009008209.1

    UniProtKB/TrEMBL
    A0A8I3W5Z0
    Conserved Domains (3) summary
    pfam16366
    Location:641 → 702
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:458 → 549
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:566 → 646
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  6. XM_009009963.4 → XP_009008211.1  cytoplasmic polyadenylation element-binding protein 3 isoform X1

    See identical proteins and their annotated locations for XP_009008211.1

    UniProtKB/TrEMBL
    A0A8I3W5Z0
    Conserved Domains (3) summary
    pfam16366
    Location:641 → 702
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:458 → 549
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:566 → 646
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  7. XM_009009962.4 → XP_009008210.1  cytoplasmic polyadenylation element-binding protein 3 isoform X1

    See identical proteins and their annotated locations for XP_009008210.1

    UniProtKB/TrEMBL
    A0A8I3W5Z0
    Conserved Domains (3) summary
    pfam16366
    Location:641 → 702
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:458 → 549
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:566 → 646
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  8. XM_035268465.2 → XP_035124356.1  cytoplasmic polyadenylation element-binding protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8I3W5Z0
    Conserved Domains (3) summary
    pfam16366
    Location:633 → 694
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:450 → 541
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:558 → 638
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  9. XM_035268467.2 → XP_035124358.1  cytoplasmic polyadenylation element-binding protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A8I3X0L6, A0A8I3XDC5
    Conserved Domains (3) summary
    pfam16366
    Location:610 → 671
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:427 → 518
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:535 → 615
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  10. XM_035268462.2 → XP_035124353.1  cytoplasmic polyadenylation element-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8I3W5Z0
    Conserved Domains (3) summary
    pfam16366
    Location:641 → 702
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:458 → 549
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:566 → 646
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  11. XM_009009960.4 → XP_009008208.1  cytoplasmic polyadenylation element-binding protein 3 isoform X1

    See identical proteins and their annotated locations for XP_009008208.1

    UniProtKB/TrEMBL
    A0A8I3W5Z0
    Conserved Domains (3) summary
    pfam16366
    Location:641 → 702
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:458 → 549
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:566 → 646
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  12. XM_009009964.4 → XP_009008212.1  cytoplasmic polyadenylation element-binding protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8I3W5Z0
    Related
    ENSCJAP00000015645.1
    Conserved Domains (3) summary
    pfam16366
    Location:633 → 694
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:450 → 541
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:558 → 638
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  13. XM_009009966.4 → XP_009008214.1  cytoplasmic polyadenylation element-binding protein 3 isoform X4

    See identical proteins and their annotated locations for XP_009008214.1

    UniProtKB/TrEMBL
    A0A8I3X0L6, A0A8I3XDC5
    Conserved Domains (3) summary
    pfam16366
    Location:610 → 671
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:427 → 518
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:535 → 615
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
Nucleotide Protein
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