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MYO6 myosin VI [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100391794, updated on 6-Jun-2024

Summary

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Gene symbol
MYO6
Gene description
myosin VI
See related
Ensembl:ENSCJAG00000010541
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See MYO6 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
38
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 4 NC_071445.1 (77094913..77257504)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 4 NC_048386.1 (77635464..77798197)

Chromosome 4 - NC_071445.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118152892 Neighboring gene SUMO specific peptidase 6 Neighboring gene high mobility group protein B3-like Neighboring gene small nucleolar RNA U13 Neighboring gene interphotoreceptor matrix proteoglycan 1 Neighboring gene uncharacterized LOC128931788 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microfilament motor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inner ear auditory receptor cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inner ear morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle transport along actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ruffle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
unconventional myosin-VI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071445.1 Reference mCalJa1.2.pat.X

    Range
    77094913..77257504
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008994687.3 → XP_008992935.1  unconventional myosin-VI isoform X1

    UniProtKB/TrEMBL
    A0A8I3WTU5
    Related
    ENSCJAP00000019583.2
    Conserved Domains (4) summary
    cd01382
    Location:71 → 759
    MYSc_Myo6; class VI myosin, motor domain
    pfam16521
    Location:1177 → 1267
    Myosin-VI_CBD; Myosin VI cargo binding domain
    cd21759
    Location:770 → 917
    CBD_MYO6-like; calmodulin binding domain found in unconventional myosin-VI and similar proteins
    cd22294
    Location:999 → 1068
    MYO6_MIU_linker; MIU-linker domain found in unconventional myosin-VI

  2. XM_035296157.2 → XP_035152048.1  unconventional myosin-VI isoform X1

    UniProtKB/TrEMBL
    A0A8I3WTU5
    Conserved Domains (4) summary
    cd01382
    Location:71 → 759
    MYSc_Myo6; class VI myosin, motor domain
    pfam16521
    Location:1177 → 1267
    Myosin-VI_CBD; Myosin VI cargo binding domain
    cd21759
    Location:770 → 917
    CBD_MYO6-like; calmodulin binding domain found in unconventional myosin-VI and similar proteins
    cd22294
    Location:999 → 1068
    MYO6_MIU_linker; MIU-linker domain found in unconventional myosin-VI

  3. XM_054254177.1 → XP_054110152.1  unconventional myosin-VI isoform X2

    UniProtKB/TrEMBL
    F6TZL9

  4. XM_054254178.1 → XP_054110153.1  unconventional myosin-VI isoform X3

    UniProtKB/TrEMBL
    A0A8I4A1W6

  5. XM_054254179.1 → XP_054110154.1  unconventional myosin-VI isoform X4

    UniProtKB/TrEMBL
    A0A8I4A1W6

  6. XM_054254180.1 → XP_054110155.1  unconventional myosin-VI isoform X5

    UniProtKB/TrEMBL
    F6QBP2

  7. XM_054254181.1 → XP_054110156.1  unconventional myosin-VI isoform X6

    UniProtKB/TrEMBL
    F6QBP2

RNA

  1. XR_008480720.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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