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BCOR BCL6 corepressor [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100391692, updated on 8-Mar-2024

Summary

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Gene symbol
BCOR
Gene description
BCL6 corepressor
See related
Ensembl:ENSCJAG00000003758
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See BCOR in Genome Data Viewer
Location:
chromosome: X
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) X NC_071464.1 (39348266..39475110, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) X NC_048405.1 (39134449..39261453, complement)

Chromosome X - NC_071464.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S11-like Neighboring gene uncharacterized LOC108589963 Neighboring gene translation initiation factor IF-2 Neighboring gene uncharacterized LOC108589940 Neighboring gene uncharacterized LOC108589782

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BCL-6 corepressor
Names
BCL6 co-repressor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071464.1 Reference mCalJa1.2.pat.X

    Range
    39348266..39475110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035289658.2 → XP_035145549.1  BCL-6 corepressor isoform X1

    UniProtKB/TrEMBL
    U3BD88, U3DDS9
    Conserved Domains (5) summary
    cd14261
    Location:1637 → 1751
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1468 → 1499
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1472 → 1563
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1206 → 1419
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region

  2. XM_035289660.2 → XP_035145551.1  BCL-6 corepressor isoform X1

    UniProtKB/TrEMBL
    U3BD88, U3DDS9
    Conserved Domains (5) summary
    cd14261
    Location:1637 → 1751
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1468 → 1499
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1472 → 1563
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1206 → 1419
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region

  3. XM_017968554.3 → XP_017824043.2  BCL-6 corepressor isoform X1

    UniProtKB/TrEMBL
    U3BD88, U3DDS9
    Conserved Domains (5) summary
    cd14261
    Location:1637 → 1751
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1468 → 1499
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1472 → 1563
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1206 → 1419
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region

  4. XM_035289662.2 → XP_035145553.1  BCL-6 corepressor isoform X2

    UniProtKB/TrEMBL
    A0A5F4WML4
    Conserved Domains (5) summary
    cd14261
    Location:1619 → 1733
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1450 → 1481
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1454 → 1545
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1188 → 1401
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region

  5. XM_035289657.2 → XP_035145548.1  BCL-6 corepressor isoform X1

    UniProtKB/TrEMBL
    U3BD88, U3DDS9
    Conserved Domains (5) summary
    cd14261
    Location:1637 → 1751
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1468 → 1499
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1472 → 1563
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1206 → 1419
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region

  6. XM_035289659.2 → XP_035145550.1  BCL-6 corepressor isoform X1

    UniProtKB/TrEMBL
    U3BD88, U3DDS9
    Conserved Domains (5) summary
    cd14261
    Location:1637 → 1751
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1468 → 1499
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1472 → 1563
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1206 → 1419
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region

  7. XM_035289663.2 → XP_035145554.1  BCL-6 corepressor isoform X4

    UniProtKB/TrEMBL
    A0A5F4W0K2, A0A5F4WML4
    Conserved Domains (5) summary
    cd14261
    Location:1603 → 1717
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1434 → 1465
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1438 → 1529
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1172 → 1385
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region

  8. XM_035289665.2 → XP_035145556.1  BCL-6 corepressor isoform X5

    UniProtKB/TrEMBL
    U3BD88, U3DDS9
    Conserved Domains (5) summary
    pfam05109
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1468 → 1499
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1472 → 1563
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1206 → 1419
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    cl21640
    Location:1637 → 1728
    PUFD_like; PCGF Ub-like fold discriminator and related domains

  9. XM_002762785.5 → XP_002762831.1  BCL-6 corepressor isoform X3

    See identical proteins and their annotated locations for XP_002762831.1

    UniProtKB/TrEMBL
    A0A8J8XZ08, U3BD88, U3DDS9
    Related
    ENSCJAP00000006886.2
    Conserved Domains (5) summary
    cd00204
    Location:1462 → 1570
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14261
    Location:1637 → 1751
    PUFD; PCGF Ub-like fold discriminator of BCOR
    sd00045
    Location:1468 → 1499
    ANK; ANK repeat [structural motif]
    pfam15808
    Location:1206 → 1419
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    cl25496
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  10. XM_008989146.4 → XP_008987394.1  BCL-6 corepressor isoform X7

    See identical proteins and their annotated locations for XP_008987394.1

    UniProtKB/TrEMBL
    U3BWA7, U3CQJ9
    Related
    ENSCJAP00000045162.1
    Conserved Domains (5) summary
    cd14261
    Location:1585 → 1699
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1416 → 1447
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1420 → 1511
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1154 → 1367
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region

  11. XM_035289668.2 → XP_035145559.1  BCL-6 corepressor isoform X6

    UniProtKB/TrEMBL
    U3BWA7, U3C905, U3CQJ9
    Conserved Domains (5) summary
    cd14261
    Location:1603 → 1717
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1434 → 1465
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1438 → 1529
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1172 → 1385
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
Nucleotide Protein
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