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SHC1 SHC adaptor protein 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100390337, updated on 10-Oct-2024

Summary

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Gene symbol
SHC1
Gene description
SHC adaptor protein 1
See related
Ensembl:ENSCJAG00000009236
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See SHC1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 18 NC_071459.1 (8942060..8954795, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 18 NC_048400.1 (8949900..8962657, complement)

Chromosome 18 - NC_071459.1Genomic Context describing neighboring genes Neighboring gene PBX homeobox interacting protein 1 Neighboring gene pygopus family PHD finger 2 Neighboring gene uncharacterized LOC128930128 Neighboring gene CDC28 protein kinase regulatory subunit 1B Neighboring gene flavin adenine dinucleotide synthetase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables receptor tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SHC-transforming protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071459.1 Reference mCalJa1.2.pat.X

    Range
    8942060..8954795 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035278965.2 → XP_035134856.1  SHC-transforming protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A2R8MZ10
    Conserved Domains (3) summary
    cd09925
    Location:363 → 466
    SH2_SHC; Src homology 2 (SH2) domain found in SH2 adaptor protein C (SHC)
    PHA03247
    Location:262 → 381
    PHA03247; large tegument protein UL36; Provisional
    cd01209
    Location:36 → 207
    PTB_Shc; Shc-like phosphotyrosine-binding (PTB) domain

  2. XM_002760058.6 → XP_002760104.1  SHC-transforming protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A2R8MZ10
    Conserved Domains (2) summary
    cd09925
    Location:364 → 467
    SH2_SHC; Src homology 2 (SH2) domain found in SH2 adaptor protein C (SHC)
    cd01209
    Location:36 → 207
    PTB_Shc; Shc-like phosphotyrosine-binding (PTB) domain

  3. XM_054247862.1 → XP_054103837.1  SHC-transforming protein 1 isoform X6

  4. XM_054247861.1 → XP_054103836.1  SHC-transforming protein 1 isoform X6

  5. XM_054247860.1 → XP_054103835.1  SHC-transforming protein 1 isoform X5

  6. XM_054247857.1 → XP_054103832.1  SHC-transforming protein 1 isoform X3

  7. XM_008984498.4 → XP_008982746.1  SHC-transforming protein 1 isoform X2

    See identical proteins and their annotated locations for XP_008982746.1

    UniProtKB/TrEMBL
    A0A2R8MZ10, F7C2B3
    Related
    ENSCJAP00000016965.2
    Conserved Domains (2) summary
    cd09925
    Location:474 → 577
    SH2_SHC; Src homology 2 (SH2) domain found in SH2 adaptor protein C (SHC)
    cd01209
    Location:146 → 317
    PTB_Shc; Shc-like phosphotyrosine-binding (PTB) domain

  8. XM_008984499.4 → XP_008982747.1  SHC-transforming protein 1 isoform X4

    Conserved Domains (2) summary
    cd01209
    Location:36 → 207
    PTB_Shc; Shc-like phosphotyrosine-binding (PTB) domain
    cl15255
    Location:363 → 456
    SH2; Src homology 2 (SH2) domain

  9. XM_054247859.1 → XP_054103834.1  SHC-transforming protein 1 isoform X4

  10. XM_054247858.1 → XP_054103833.1  SHC-transforming protein 1 isoform X4

  11. XM_008984497.4 → XP_008982745.1  SHC-transforming protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2R8MZ10
    Conserved Domains (2) summary
    cd01209
    Location:146 → 317
    PTB_Shc; Shc-like phosphotyrosine-binding (PTB) domain
    cl15255
    Location:473 → 566
    SH2; Src homology 2 (SH2) domain
Nucleotide Protein
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