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GLDC glycine decarboxylase [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100388867, updated on 8-Mar-2024

Summary

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Gene symbol
GLDC
Gene description
glycine decarboxylase
See related
Ensembl:ENSCJAG00000011661
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See GLDC in Genome Data Viewer
Location:
chromosome: 1
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 1 NC_071442.1 (109834744..109970379, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 1 NC_048383.1 (111182526..111318156, complement)

Chromosome 1 - NC_071442.1Genomic Context describing neighboring genes Neighboring gene interleukin 33 Neighboring gene ubiquitin like with PHD and ring finger domains 2 Neighboring gene small nucleolar RNA U13 Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like Neighboring gene 39S ribosomal protein L43, mitochondrial-like Neighboring gene 60S ribosomal protein L35a-like Neighboring gene actin, cytoplasmic 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycine dehydrogenase (decarboxylating) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycine decarboxylation via glycine cleavage system IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycine cleavage complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycine dehydrogenase (decarboxylating), mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071442.1 Reference mCalJa1.2.pat.X

    Range
    109834744..109970379 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035305377.2 → XP_035161268.1  glycine dehydrogenase (decarboxylating), mitochondrial

    UniProtKB/TrEMBL
    F6TRY9
    Conserved Domains (1) summary
    PRK05367
    Location:57 → 1009
    PRK05367; aminomethyl-transferring glycine dehydrogenase
Nucleotide Protein
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