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CALR3 calreticulin 3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100388538, updated on 8-Mar-2024

Summary

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Gene symbol
CALR3
Gene description
calreticulin 3
See related
Ensembl:ENSCJAG00000013978
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See CALR3 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 22 NC_071463.1 (14754411..14774664, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 22 NC_048404.1 (14828621..14848879, complement)

Chromosome 22 - NC_071463.1Genomic Context describing neighboring genes Neighboring gene KLF transcription factor 2 Neighboring gene epidermal growth factor receptor pathway substrate 15 like 1 Neighboring gene chromosome 22 C19orf44 homolog Neighboring gene uncharacterized LOC118150302 Neighboring gene calcium homeostasis endoplasmic reticulum protein Neighboring gene solute carrier family 35 member E1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calreticulin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071463.1 Reference mCalJa1.2.pat.X

    Range
    14754411..14774664 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035287135.2 → XP_035143026.1  calreticulin-3

    UniProtKB/TrEMBL
    A0A5F4W4L8, A0A8J8XBU2, F6XRD2, U3CRS1
    Conserved Domains (1) summary
    pfam00262
    Location:23 → 318
    Calreticulin; Calreticulin family
Nucleotide Protein
Heading Accession and Version

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