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PALM paralemmin [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100388172, updated on 8-Mar-2024

Summary

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Gene symbol
PALM
Gene description
paralemmin
See related
Ensembl:ENSCJAG00000020203
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 22 NC_071463.1 (405492..440164)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 22 NC_048404.1 (393172..427849)

Chromosome 22 - NC_071463.1Genomic Context describing neighboring genes Neighboring gene follistatin like 3 Neighboring gene serine protease 57 Neighboring gene mitotic spindle positioning Neighboring gene polypyrimidine tract binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of adenylate cyclase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of filopodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paralemmin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071463.1 Reference mCalJa1.2.pat.X

    Range
    405492..440164
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035285847.2 → XP_035141738.1  paralemmin-1 isoform X5

    Conserved Domains (2) summary
    COG1196
    Location:2 → 99
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:71 → 372
    Paralemmin

  2. XM_035285845.2 → XP_035141736.1  paralemmin-1 isoform X2

    UniProtKB/TrEMBL
    A0A5F4WBB5, U3B7V4
    Conserved Domains (2) summary
    COG1196
    Location:2 → 99
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:71 → 379
    Paralemmin

  3. XM_035285851.2 → XP_035141742.1  paralemmin-1 isoform X9

    Conserved Domains (2) summary
    COG1196
    Location:2 → 99
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:71 → 328
    Paralemmin

  4. XM_035285849.2 → XP_035141740.1  paralemmin-1 isoform X7

    UniProtKB/TrEMBL
    A0A5F4WLG9
    Conserved Domains (2) summary
    COG1196
    Location:2 → 99
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:71 → 335
    Paralemmin

  5. XM_054250465.1 → XP_054106440.1  paralemmin-1 isoform X3

    UniProtKB/TrEMBL
    A0A5F4WBB5, U3B7V4

  6. XM_035285844.1 → XP_035141735.1  paralemmin-1 isoform X1

    Conserved Domains (2) summary
    COG1196
    Location:29 → 127
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:99 → 407
    Paralemmin

  7. XM_035285848.1 → XP_035141739.1  paralemmin-1 isoform X6

    Conserved Domains (2) summary
    COG1196
    Location:29 → 127
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:99 → 363
    Paralemmin

  8. XM_035285846.1 → XP_035141737.1  paralemmin-1 isoform X4

    Conserved Domains (2) summary
    COG1196
    Location:3 → 98
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:70 → 378
    Paralemmin

  9. XM_035285850.1 → XP_035141741.1  paralemmin-1 isoform X8

    Conserved Domains (2) summary
    COG1196
    Location:3 → 98
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:70 → 334
    Paralemmin

  10. XM_035285852.1 → XP_035141743.1  paralemmin-1 isoform X10

    Conserved Domains (2) summary
    COG1196
    Location:3 → 98
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:70 → 327
    Paralemmin
Nucleotide Protein
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