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LCTL lactase like [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100387760, updated on 10-Oct-2024

Summary

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Gene symbol
LCTL
Gene description
lactase like
See related
Ensembl:ENSCJAG00000007558
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See LCTL in Genome Data Viewer
Location:
chromosome: 10
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 10 NC_071451.1 (11072622..11099261, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 10 NC_048392.1 (11297851..11322458, complement)

Chromosome 10 - NC_071451.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD16 Neighboring gene small nucleolar RNA SNORD18 Neighboring gene zwilch kinetochore protein Neighboring gene ribosomal protein L4 Neighboring gene uncharacterized LOC128928736 Neighboring gene coiled-coil-helix-coiled-coil-helix domain-containing protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactase-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071451.1 Reference mCalJa1.2.pat.X

    Range
    11072622..11099261 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035258953.2 → XP_035114844.2  lactase-like protein isoform X2

  2. XM_035258954.2 → XP_035114845.2  lactase-like protein isoform X3

  3. XM_035258951.2 → XP_035114842.2  lactase-like protein isoform X1

  4. XM_035258955.2 → XP_035114846.2  lactase-like protein isoform X4

    UniProtKB/TrEMBL
    F7HXV9

  5. XM_035258956.2 → XP_035114847.2  lactase-like protein isoform X5

  6. XM_035258957.2 → XP_035114848.2  lactase-like protein isoform X6

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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