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SPHK2 sphingosine kinase 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100387720, updated on 8-Mar-2024

Summary

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Gene symbol
SPHK2
Gene description
sphingosine kinase 2
See related
Ensembl:ENSCJAG00000000366
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See SPHK2 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 22 NC_071463.1 (41067852..41077540)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 22 NC_048404.1 (42386785..42396634)

Chromosome 22 - NC_071463.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 83 member E Neighboring gene sperm acrosome associated 4 Neighboring gene ribosomal protein L18 Neighboring gene D-box binding PAR bZIP transcription factor Neighboring gene carbonic anhydrase 11 Neighboring gene fucosyltransferase 2 (H blood group)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-erythro-sphingosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphinganine-1-phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine kinase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071463.1 Reference mCalJa1.2.pat.X

    Range
    41067852..41077540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002762327.5 → XP_002762373.2  sphingosine kinase 2 isoform X1

    UniProtKB/TrEMBL
    F6QLH2, U3CP68, U3EXH5
    Conserved Domains (3) summary
    PLN02958
    Location:187 → 381
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase
    PHA03247
    Location:380 → 516
    PHA03247; large tegument protein UL36; Provisional
    PRK11914
    Location:550 → 648
    PRK11914; diacylglycerol kinase; Reviewed

  2. XM_008988336.4 → XP_008986584.2  sphingosine kinase 2 isoform X1

    UniProtKB/TrEMBL
    F6QLH2, U3CP68, U3EXH5
    Conserved Domains (3) summary
    PLN02958
    Location:187 → 381
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase
    PHA03247
    Location:380 → 516
    PHA03247; large tegument protein UL36; Provisional
    PRK11914
    Location:550 → 648
    PRK11914; diacylglycerol kinase; Reviewed

  3. XM_008988337.3 → XP_008986585.2  sphingosine kinase 2 isoform X1

    UniProtKB/TrEMBL
    F6QLH2, U3CP68, U3EXH5
    Conserved Domains (3) summary
    PLN02958
    Location:187 → 381
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase
    PHA03247
    Location:380 → 516
    PHA03247; large tegument protein UL36; Provisional
    PRK11914
    Location:550 → 648
    PRK11914; diacylglycerol kinase; Reviewed

  4. XM_035285766.2 → XP_035141657.1  sphingosine kinase 2 isoform X1

    UniProtKB/TrEMBL
    F6QLH2, U3CP68, U3EXH5
    Conserved Domains (3) summary
    PLN02958
    Location:187 → 381
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase
    PHA03247
    Location:380 → 516
    PHA03247; large tegument protein UL36; Provisional
    PRK11914
    Location:550 → 648
    PRK11914; diacylglycerol kinase; Reviewed

  5. XM_035285767.2 → XP_035141658.1  sphingosine kinase 2 isoform X1

    UniProtKB/TrEMBL
    F6QLH2, U3CP68, U3EXH5
    Conserved Domains (3) summary
    PLN02958
    Location:187 → 381
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase
    PHA03247
    Location:380 → 516
    PHA03247; large tegument protein UL36; Provisional
    PRK11914
    Location:550 → 648
    PRK11914; diacylglycerol kinase; Reviewed

  6. XM_017967550.3 → XP_017823039.2  sphingosine kinase 2 isoform X1

    UniProtKB/TrEMBL
    F6QLH2, U3CP68, U3EXH5
    Conserved Domains (3) summary
    PLN02958
    Location:187 → 381
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase
    PHA03247
    Location:380 → 516
    PHA03247; large tegument protein UL36; Provisional
    PRK11914
    Location:550 → 648
    PRK11914; diacylglycerol kinase; Reviewed

  7. XM_035285768.2 → XP_035141659.1  sphingosine kinase 2 isoform X1

    UniProtKB/TrEMBL
    F6QLH2, U3CP68, U3EXH5
    Conserved Domains (3) summary
    PLN02958
    Location:187 → 381
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase
    PHA03247
    Location:380 → 516
    PHA03247; large tegument protein UL36; Provisional
    PRK11914
    Location:550 → 648
    PRK11914; diacylglycerol kinase; Reviewed

  8. XM_017967553.3 → XP_017823042.2  sphingosine kinase 2 isoform X2

    UniProtKB/TrEMBL
    A0A8I3W260
    Conserved Domains (3) summary
    PLN02958
    Location:151 → 345
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase
    PHA03247
    Location:344 → 480
    PHA03247; large tegument protein UL36; Provisional
    PRK11914
    Location:514 → 612
    PRK11914; diacylglycerol kinase; Reviewed

  9. XM_008988340.4 → XP_008986588.2  sphingosine kinase 2 isoform X2

    UniProtKB/TrEMBL
    A0A8I3W260
    Conserved Domains (3) summary
    PLN02958
    Location:151 → 345
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase
    PHA03247
    Location:344 → 480
    PHA03247; large tegument protein UL36; Provisional
    PRK11914
    Location:514 → 612
    PRK11914; diacylglycerol kinase; Reviewed

  10. XM_017967552.3 → XP_017823041.2  sphingosine kinase 2 isoform X2

    UniProtKB/TrEMBL
    A0A8I3W260
    Conserved Domains (3) summary
    PLN02958
    Location:151 → 345
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase
    PHA03247
    Location:344 → 480
    PHA03247; large tegument protein UL36; Provisional
    PRK11914
    Location:514 → 612
    PRK11914; diacylglycerol kinase; Reviewed
Nucleotide Protein
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