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POP5 POP5 homolog, ribonuclease P/MRP subunit [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100386563, updated on 8-Mar-2024

Summary

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Gene symbol
POP5
Gene description
POP5 homolog, ribonuclease P/MRP subunit
See related
Ensembl:ENSCJAG00000001309
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See POP5 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 9 NC_071450.1 (120208511..120210994, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 9 NC_048391.1 (121273673..121276156, complement)

Chromosome 9 - NC_071450.1Genomic Context describing neighboring genes Neighboring gene coenzyme Q5, methyltransferase Neighboring gene 60S ribosomal protein L36a-like Neighboring gene ring finger protein 10 Neighboring gene ferritin heavy chain-like Neighboring gene calcium binding protein 1 Neighboring gene 40S ribosomal protein S2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribonuclease P RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA 5'-leader removal IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ribonuclease P complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribonuclease P/MRP protein subunit POP5
Names
processing of precursor 5, ribonuclease P/MRP subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071450.1 Reference mCalJa1.2.pat.X

    Range
    120208511..120210994 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009004784.4 → XP_009003032.1  ribonuclease P/MRP protein subunit POP5 isoform X3

    UniProtKB/TrEMBL
    U3F5G8
    Conserved Domains (1) summary
    pfam01900
    Location:38 → 141
    RNase_P_Rpp14; Rpp14/Pop5 family

  2. XM_002753090.6 → XP_002753136.2  ribonuclease P/MRP protein subunit POP5 isoform X1

    UniProtKB/TrEMBL
    F7ITC9, U3F5G8
    Related
    ENSCJAP00000002296.2
    Conserved Domains (1) summary
    pfam01900
    Location:38 → 146
    RNase_P_Rpp14; Rpp14/Pop5 family

  3. XM_009004783.4 → XP_009003031.1  ribonuclease P/MRP protein subunit POP5 isoform X2

    Conserved Domains (1) summary
    pfam01900
    Location:38 → 135
    RNase_P_Rpp14; Rpp14/Pop5 family
Nucleotide Protein
Heading Accession and Version

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