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IREB2 iron responsive element binding protein 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100385776, updated on 8-Mar-2024

Summary

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Gene symbol
IREB2
Gene description
iron responsive element binding protein 2
See related
Ensembl:ENSCJAG00000010259
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See IREB2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 10 NC_071451.1 (23383580..23445514)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 10 NC_048392.1 (23501559..23563444)

Chromosome 10 - NC_071451.1Genomic Context describing neighboring genes Neighboring gene cellular retinoic acid binding protein 1 Neighboring gene uncharacterized LOC128928755 Neighboring gene iron-sulfur cluster assembly 1 homolog, mitochondrial-like Neighboring gene hydroxylysine kinase Neighboring gene proteasome 20S subunit alpha 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aconitate hydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in citrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
iron-responsive element-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071451.1 Reference mCalJa1.2.pat.X

    Range
    23383580..23445514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002759844.6 → XP_002759890.3  iron-responsive element-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    F6T5R8, U3FJY5

  2. XM_054239523.1 → XP_054095498.1  iron-responsive element-binding protein 2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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