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FKRP fukutin related protein [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100385568, updated on 8-Mar-2024

Summary

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Gene symbol
FKRP
Gene description
fukutin related protein
See related
Ensembl:ENSCJAG00000011741
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See FKRP in Genome Data Viewer
Location:
chromosome: 22
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 22 NC_071463.1 (39305879..39317189)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 22 NC_048404.1 (40619135..40630444)

Chromosome 22 - NC_071463.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene microtubule-associated protein RP/EB family member 1-like Neighboring gene protein kinase D2 Neighboring gene striatin 4 Neighboring gene solute carrier family 1 member 5 Neighboring gene adaptor related protein complex 2 subunit sigma 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribitol 5-phosphate transferase FKRP

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071463.1 Reference mCalJa1.2.pat.X

    Range
    39305879..39317189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035287338.2 → XP_035143229.1  ribitol 5-phosphate transferase FKRP

    UniProtKB/TrEMBL
    F6TG30
    Conserved Domains (1) summary
    cl01378
    Location:334 → 371
    LicD; LicD family

  2. XM_035287337.2 → XP_035143228.1  ribitol 5-phosphate transferase FKRP

    UniProtKB/TrEMBL
    F6TG30
    Conserved Domains (1) summary
    cl01378
    Location:334 → 371
    LicD; LicD family

  3. XM_054249359.1 → XP_054105334.1  ribitol 5-phosphate transferase FKRP

    UniProtKB/TrEMBL
    F6TG30

  4. XM_054249360.1 → XP_054105335.1  ribitol 5-phosphate transferase FKRP

    UniProtKB/TrEMBL
    F6TG30

  5. XM_017967828.3 → XP_017823317.1  ribitol 5-phosphate transferase FKRP

    UniProtKB/TrEMBL
    F6TG30
    Related
    ENSCJAP00000021568.2
    Conserved Domains (1) summary
    cl01378
    Location:334 → 371
    LicD; LicD family

  6. XM_035287339.2 → XP_035143230.1  ribitol 5-phosphate transferase FKRP

    UniProtKB/TrEMBL
    F6TG30
    Conserved Domains (1) summary
    cl01378
    Location:334 → 371
    LicD; LicD family
Nucleotide Protein
Heading Accession and Version

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