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PTPRC protein tyrosine phosphatase receptor type C [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100385061, updated on 10-Oct-2024

Summary

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Gene symbol
PTPRC
Gene description
protein tyrosine phosphatase receptor type C
See related
Ensembl:ENSCJAG00000004982
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Also known as
CD45
Orthologs
human mouse all
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Genomic context

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See PTPRC in Genome Data Viewer
Location:
chromosome: 19
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 19 NC_071460.1 (21711361..21830960)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 19 NC_048401.1 (22703477..22823049)

Chromosome 19 - NC_071460.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U3 Neighboring gene ATPase H+ transporting V1 subunit G3 Neighboring gene S-adenosylmethionine decarboxylase proenzyme-like Neighboring gene uncharacterized LOC103789251

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T cell receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of peptidyl-tyrosine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor-type tyrosine-protein phosphatase C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071460.1 Reference mCalJa1.2.pat.X

    Range
    21711361..21830960
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035280563.2 → XP_035136454.2  receptor-type tyrosine-protein phosphatase C isoform X5

    UniProtKB/TrEMBL
    A0A8I4A0Q7

  2. XM_054248365.1 → XP_054104340.1  receptor-type tyrosine-protein phosphatase C isoform X1

    UniProtKB/TrEMBL
    A0A8I3X8C2

  3. XM_054248366.1 → XP_054104341.1  receptor-type tyrosine-protein phosphatase C isoform X2

  4. XM_035280560.2 → XP_035136451.2  receptor-type tyrosine-protein phosphatase C isoform X3

  5. XM_035280562.2 → XP_035136453.2  receptor-type tyrosine-protein phosphatase C isoform X4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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