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ankrd49.S ankyrin repeat domain 49 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100380951, updated on 4-Nov-2024

Summary

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Official Symbol
ankrd49.S
Official Full Name
ankyrin repeat domain 49 S homeolog
Primary source
Xenbase:XB-GENE-865251
Locus tag
XELAEV_18016327mg
See related
EnsemblRapid:ENSXLAG00005000170 AllianceGenome:Xenbase:XB-GENE-865251
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ankrd49; ankrd49.L
Summary
Predicted to enable DNA binding activity. Predicted to act upstream of or within positive regulation of DNA-templated transcription. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ankrd49.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (156736876..156756284, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (147742816..147762256, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene traf2 and NCK-interacting protein kinase Neighboring gene uncharacterized LOC108709146 Neighboring gene G protein-coupled receptor 83 gene 2 S homeolog Neighboring gene traf2 and NCK-interacting protein kinase-like Neighboring gene probable serine/threonine-protein kinase kinX

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ankyrin repeat domain 49 S homeolog
Names
ankyrin repeat domain 49 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001173996.1 → NP_001167467.1  ankyrin repeat domain 49 S homeolog

    See identical proteins and their annotated locations for NP_001167467.1

    Status: PROVISIONAL

    Source sequence(s)
    BC106278
    UniProtKB/TrEMBL
    Q3KQC4, Q6NRY4
    Conserved Domains (4) summary
    cd00204
    Location:101 → 215
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:98 → 190
    Ank_2; Ankyrin repeats (3 copies)
    pfam13857
    Location:180 → 236
    Ank_5; Ankyrin repeats (many copies)
    sd00045
    Location:130 → 158
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    156736876..156756284 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041582943.1 → XP_041438877.1  ankyrin repeat domain 49 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A1L8HB69, A0A974DM39, Q6NRY4
    Related
    ENSXLAP00005000418.1, ENSXLAT00005000445.1
    Conserved Domains (3) summary
    sd00045
    Location:130 → 158
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:96 → 148
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:132 → 226
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_018247974.2 → XP_018103463.1  ankyrin repeat domain 49 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A1L8HB69, A0A974DM39, Q6NRY4
    Related
    ENSXLAP00005000417.1, ENSXLAT00005000444.1
    Conserved Domains (3) summary
    sd00045
    Location:130 → 158
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:96 → 148
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:132 → 226
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_018247970.2 → XP_018103459.1  ankyrin repeat domain 49 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0UGB7

  4. XM_018247972.2 → XP_018103461.1  ankyrin repeat domain 49 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0UGB7

  5. XM_018247971.2 → XP_018103460.1  ankyrin repeat domain 49 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0UGB7
Nucleotide Protein Strain
Heading Accession and Version

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