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rhbl4 Rhomboid-like protease 4 [ Salmo salar (Atlantic salmon) ]

Gene ID: 100380409, updated on 10-Oct-2024

Summary

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Gene symbol
rhbl4
Gene description
Rhomboid-like protease 4
See related
Ensembl:ENSSSAG00000004938
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See rhbl4 in Genome Data Viewer
Location:
chromosome: ssa01
Exon count:
19
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa01 NC_059442.1 (89257672..89339064, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa01 NC_027300.1 (75163035..75243859, complement)

Chromosome ssa01 - NC_059442.1Genomic Context describing neighboring genes Neighboring gene UBA-like domain-containing protein 1 Neighboring gene forkhead box protein J1-B Neighboring gene uncharacterized LOC106609621 Neighboring gene hemoglobin subunit beta-2 Neighboring gene aquaporin-8-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of epidermal growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Rhomboid-like protease 4; rhomboid-like protease 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001173693.1 → NP_001167164.1  Rhomboid-like protease 4

    See identical proteins and their annotated locations for NP_001167164.1

    Status: PROVISIONAL

    Source sequence(s)
    BT059254
    UniProtKB/TrEMBL
    A0A1S3Q5F6, C0HA98
    Related
    ENSSSAP00000010289.1, ENSSSAT00000010976.2
    Conserved Domains (2) summary
    pfam01694
    Location:583 → 721
    Rhomboid; Rhomboid family
    pfam12595
    Location:19 → 240
    Rhomboid_SP; Rhomboid serine protease

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059442.1 Reference Ssal_v3.1

    Range
    89257672..89339064 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014207861.2 → XP_014063336.1  rhomboid-like protease 4 isoform X1

    UniProtKB/TrEMBL
    A0A1S3Q5F6, A0A1S3SG74
    Related
    ENSSSAP00000009926.1, ENSSSAT00000010589.2
    Conserved Domains (2) summary
    pfam01694
    Location:658 → 796
    Rhomboid; Rhomboid family
    pfam12595
    Location:94 → 315
    Rhomboid_SP; Rhomboid serine protease

  2. XM_014207869.2 → XP_014063344.2  rhomboid-like protease 4 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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