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SYNJ2 synaptojanin 2 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100355301, updated on 10-Oct-2024

Summary

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Gene symbol
SYNJ2
Gene description
synaptojanin 2
See related
Ensembl:ENSOCUG00000004762
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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See SYNJ2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 12 NC_067385.1 (7717705..7809109, complement)

Chromosome 12 - NC_067385.1Genomic Context describing neighboring genes Neighboring gene general transcription factor IIH subunit 5 Neighboring gene serine active site containing 1 Neighboring gene uncharacterized LOC127493117 Neighboring gene sorting nexin 9 Neighboring gene uncharacterized LOC103349941

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067385.1 Chromosome 12 Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NC_067385.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    7717705..7809109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051855211.1 → XP_051711171.1  synaptojanin-2 isoform X2

  2. XM_008263731.3 → XP_008261953.1  synaptojanin-2 isoform X1

    UniProtKB/TrEMBL
    A0A5F9CDQ5
    Related
    ENSOCUP00000019280.2
    Conserved Domains (3) summary
    pfam02383
    Location:62 → 343
    Syja_N; SacI homology domain
    pfam08952
    Location:873 → 1009
    DUF1866; Domain of unknown function (DUF1866)
    cl00490
    Location:531 → 858
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  3. XM_051855212.1 → XP_051711172.1  synaptojanin-2 isoform X3

    UniProtKB/TrEMBL
    G1TQI5

  4. XM_051855214.1 → XP_051711174.1  synaptojanin-2 isoform X5

  5. XM_051855213.1 → XP_051711173.1  synaptojanin-2 isoform X4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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