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LSM14A LSM14A mRNA processing body assembly factor [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100354599, updated on 10-Oct-2024

Summary

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Gene symbol
LSM14A
Gene description
LSM14A mRNA processing body assembly factor
See related
Ensembl:ENSOCUG00000011872
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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See LSM14A in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 5 NC_067378.1 (4009430..4065673)

Chromosome 5 - NC_067378.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103348448 Neighboring gene U1 spliceosomal RNA Neighboring gene dnaJ homolog subfamily B member 9-like Neighboring gene FKBP prolyl isomerase 2 Neighboring gene granule associated Rac and RHOG effector 1 Neighboring gene glucose-6-phosphate isomerase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067378.1 Chromosome 5 Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein LSM14 homolog A
Names
LSM14 homolog A
LSM14A, SCD6 homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NC_067378.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    4009430..4065673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017342217.2 → XP_017197706.1  protein LSM14 homolog A isoform X2

    UniProtKB/TrEMBL
    A0A5F9CWK9, G1T252
    Related
    ENSOCUP00000010203.3

  2. XM_002711503.4 → XP_002711549.1  protein LSM14 homolog A isoform X1

    UniProtKB/TrEMBL
    A0A5F9CWK9, G1TZJ9
    Related
    ENSOCUP00000022522.2
    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:291 → 399
    FDF; FDF domain

  3. XM_008257276.3 → XP_008255498.1  protein LSM14 homolog A isoform X4

    UniProtKB/TrEMBL
    A0A5F9CWK9
    Conserved Domains (2) summary
    pfam09532
    Location:232 → 340
    FDF; FDF domain
    pfam12701
    Location:6 → 80
    LSM14; Scd6-like Sm domain

  4. XM_051846731.1 → XP_051702691.1  protein LSM14 homolog A isoform X3

Nucleotide Protein
Heading Accession and Version

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