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GALNT13 polypeptide N-acetylgalactosaminyltransferase 13 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100353091, updated on 10-Oct-2024

Summary

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Gene symbol
GALNT13
Gene description
polypeptide N-acetylgalactosaminyltransferase 13
See related
Ensembl:ENSOCUG00000017645
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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See GALNT13 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 7 NC_067380.1 (80227808..80757406, complement)

Chromosome 7 - NC_067380.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L23a-like Neighboring gene potassium inwardly rectifying channel subfamily J member 3 Neighboring gene L-lactate dehydrogenase B chain-like Neighboring gene uncharacterized LOC103348759 Neighboring gene uncharacterized LOC127491529 Neighboring gene reprimo, TP53 dependent G2 arrest mediator homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067380.1 Chromosome 7 Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NC_067380.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    80227808..80757406 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008258589.3 → XP_008256811.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X2

    See identical proteins and their annotated locations for XP_008256811.1

    UniProtKB/TrEMBL
    A0A5F9DCP6, G1TU10
    Related
    ENSOCUP00000020533.2
    Conserved Domains (3) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:431 → 549
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:431 → 547
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_017342853.2 → XP_017198342.2  polypeptide N-acetylgalactosaminyltransferase 13 isoform X1

  3. XM_051848616.1 → XP_051704576.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X1

Nucleotide Protein
Heading Accession and Version

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Research Materials