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ATRNL1 attractin like 1 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100348772, updated on 8-Mar-2024

Summary

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Gene symbol
ATRNL1
Gene description
attractin like 1
See related
Ensembl:ENSOCUG00000005958
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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See ATRNL1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 18 NC_067391.1 (59532416..60347929)

Chromosome 18 - NC_067391.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108178454 Neighboring gene TruB pseudouridine synthase family member 1 Neighboring gene vomeronasal 1 receptor oryCunV1R-ps1548 pseudogene Neighboring gene GDNF family receptor alpha 1 Neighboring gene uncharacterized LOC127484246 Neighboring gene coiled-coil domain containing 172

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067391.1 Chromosome 18 Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NC_067391.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    59532416..60347929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002718727.4 → XP_002718773.1  attractin-like protein 1

    UniProtKB/TrEMBL
    G1SQ15
    Related
    ENSOCUP00000005163.3
    Conserved Domains (8) summary
    cd03597
    Location:716 → 842
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00055
    Location:981 → 1026
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:489 → 542
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:857 → 906
    PSI; Plexin repeat
    pfam13418
    Location:436 → 482
    Kelch_4; Galactose oxidase, central domain
    pfam13854
    Location:320 → 360
    Kelch_5; Kelch motif
    cl00049
    Location:141 → 176
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cl19567
    Location:203 → 248
    DSL; Delta serrate ligand
Nucleotide Protein
Heading Accession and Version

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