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CNTN1 contactin 1 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100342120, updated on 6-Jun-2024

Summary

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Gene symbol
CNTN1
Gene description
contactin 1
See related
Ensembl:ENSOCUG00000009395
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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See CNTN1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 8 NC_067381.1 (106371960..106740811)

Chromosome 8 - NC_067381.1Genomic Context describing neighboring genes Neighboring gene mucin-22 Neighboring gene apomucin Neighboring gene uncharacterized LOC127492155 Neighboring gene uncharacterized LOC127492154 Neighboring gene protein NipSnap homolog 2-like Neighboring gene PDZ domain containing ring finger 4 Neighboring gene uncharacterized LOC127492156

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067381.1 Chromosome 8 Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NC_067381.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    106371960..106740811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051850934.1 → XP_051706894.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A5F9D0M6, G1SX46

  2. XM_051850935.1 → XP_051706895.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A5F9D0M6, G1SX46

  3. XM_051850936.1 → XP_051706896.1  contactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A5F9DIJ8

  4. XM_008259400.3 → XP_008257622.1  contactin-1 isoform X1

    See identical proteins and their annotated locations for XP_008257622.1

    UniProtKB/TrEMBL
    A0A5F9D0M6, G1SX46
    Conserved Domains (10) summary
    cd04970
    Location:520 → 601
    Ig6_Contactin_like; Sixth Ig domain of contactin
    cd05727
    Location:134 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05849
    Location:40 → 132
    Ig1_Contactin-1; First Ig domain of contactin-1
    cd05851
    Location:241 → 328
    Ig3_Contactin-1; Third Ig domain of contactin-1
    cd05852
    Location:429 → 501
    Ig5_Contactin-1; Fifth Ig domain of contactin-1
    smart00410
    Location:422 → 501
    IG_like; Immunoglobulin like
    cd00063
    Location:610 → 697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:331 → 408
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:811 → 893
    fn3; Fibronectin type III domain
    cl11960
    Location:332 → 408
    Ig; Immunoglobulin domain
Nucleotide Protein
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