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CHST9 carbohydrate sulfotransferase 9 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100341864, updated on 8-Mar-2024

Summary

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Gene symbol
CHST9
Gene description
carbohydrate sulfotransferase 9
See related
Ensembl:ENSOCUG00000004444
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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See CHST9 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 9 NC_067382.1 (47685583..47991313)

Chromosome 9 - NC_067382.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103349313 Neighboring gene small nucleolar RNA SNORA18 Neighboring gene zinc finger CCCH domain-containing protein 15-like Neighboring gene aquaporin 4 Neighboring gene uncharacterized LOC127492553

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067382.1 Chromosome 9 Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 9
Names
GalNAc-4-sulfotransferase 2
carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NC_067382.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    47685583..47991313
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051851321.1 → XP_051707281.1  carbohydrate sulfotransferase 9

    UniProtKB/TrEMBL
    G1SLT9
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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