U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HSPG2 heparan sulfate proteoglycan 2 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100340334, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
HSPG2
Gene description
heparan sulfate proteoglycan 2
See related
Ensembl:ENSOCUG00000010955
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See HSPG2 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
102
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 13 NC_067386.1 (131456961..131558424)

Chromosome 13 - NC_067386.1Genomic Context describing neighboring genes Neighboring gene proproteinase E Neighboring gene uncharacterized LOC100340079 Neighboring gene low density lipoprotein receptor class A domain containing 2 Neighboring gene ubiquitin specific peptidase 48

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_067386.1 Chromosome 13 Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A perlecan-inducing compound significantly inhibits smooth muscle cell function and in-stent intimal hyperplasia: novel insights into the diverse biological effects of perlecan. Segev A, et al. EuroIntervention, 2010 May. PMID 20542809
  2. Differential expression of epithelial basement membrane components nidogens and perlecan in corneal stromal cells in vitro. Santhanam A, et al. Mol Vis, 2015. PMID 26788024, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Nidogen-1 and nidogen-2 mRNAs were highly expressed in keratocytes, whereas perlecan was highly expressed in myofibroblasts.
    Title: Differential expression of epithelial basement membrane components nidogens and perlecan in corneal stromal cells in vitro.
  2. RUS3108 is a novel perlecan-inducing compound which may prevent in-stent restenosis.
    Title: A perlecan-inducing compound significantly inhibits smooth muscle cell function and in-stent intimal hyperplasia: novel insights into the diverse biological effects of perlecan.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
basement membrane-specific heparan sulfate proteoglycan core protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NC_067386.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    131456961..131558424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051856722.1 → XP_051712682.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X1

  2. XM_051856723.1 → XP_051712683.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X2

  3. XM_051856725.1 → XP_051712685.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X4

  4. XM_051856724.1 → XP_051712684.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X3

  5. XM_051856726.1 → XP_051712686.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.